Scientific Name
Carassius auratus red var.
Common Names
red crucian carp;
Bioproject
PRJCA001234
Biosample
SAMC056914
Accession No.
GWHAAIA00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
School of Life Sciences, Yunnan University
Contact
Jing Luo, jingluo@ynu.edu.cn
Sequence author(s)
Jing Luo
Released Date
2020-06-01
Assembly Level
Draft genome in scaffold level
Genome Representation
Full Genome
Assembly method
Wtdbg v1.1.006
BWA v0.7.10-r943-dirty
IrysView 2.5.1.29842
PBJelly 14.9.9
Sequencing & coverage
PacBio 75.0
Optical map 128.0
Hi-C 170.0
Illumina HiSeq 2000 53.0
Download
DNA GFF RNA Protein
Publication(s)
Jing Luo, et al. From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish. Science Advances. 2020, 6(22): eaaz7677.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAAIA00000000 - Ca1 Draft genome in scaffold level 2020-06-01 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 1,639,403,616
GC content 37.63%
Scaffold sequence No. 5,474
Maximum scaffold sequence length (bp) 11,063,794
Minimum scaffold sequence length (bp) 2,563
Average scaffold sequence length (bp) 299,489
Scaffold N50 (bp) 2,933,731
Scaffold N90 (bp) 96,045
Annotation of Whole Genome Assembly
Protein Total
Total 43,144 43,144