Scientific Name
Capsicum
Common Names
peppers;
Bioproject
PRJCA000783
Biosample
SAMC026771
Accession No.
GWHAAAT00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
-, Hunan Vegetable Research Institute, Hunan Academy of Agricultural Sciences
Contact
Dong Li, dong.li@wiserice.com.cn
Sequence author(s)
Dong Li, Xuexiao Zou, Qingma Yan, Bingbing Wang, Xiongxiong Dai
Released Date
2018-08-08
Assembly Level
Draft genome in contig level
Genome Representation
Partial Genome ( Nuclear )
Assembly method
SOAPdenovo 2
Sequencing & coverage
Illumina HiSeq 2500 10.0
Download
DNA
Publication(s)
Dong Li, et al. Pan-genome of cultivated pepper (Capsicum) and its use in gene presence–absence variation analyses. New Phytologist. 2018, 220(2):360-363.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAAAT00000000 - pepper_pan_novel_contigs.fasta Draft genome in contig level 2018-08-08 DNA

Statistics of Genome Assembly

Genome size (bp) 956,430,739
GC content 37.17%
Contig sequence No. 610,292
Maximum contig sequence length (bp) 55,121
Minimum contig sequence length (bp) 500
Average contig sequence length (bp) 1,567
Contig N50 (bp) 2,257
Contig N90 (bp) 662