- Scientific Name
- Benincasa hispida
- Common Names
- ash gourd, winter melon; wax gourd; Benincasa cerifera, Benincasa pruriens, Cucurbita hispida, Lagenaria siceraria var. hispida
- Bioproject
- PRJCA000722
- Biosample
- SAMC020706
- Accession No.
- GWHAAAR00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- -, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- Yuanchao Xu, mrcxuyuan@163.com
- Sequence author(s)
- Yuanchao Xu
- Released Date
- 2019-05-05
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- ALLPATHS-LG ALLPATHS-LG-44837
- Sequencing & coverage
- Illumina HiSeq 2000 40.0
PacBio 15.0 - Download
-
DNA
GFF
RNA
Protein
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 912,951,626 |
| GC content | 34.85% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 1,791 |
| Maximum genome sequence length (bp) | 96,417,420 |
| Minimum genome sequence length (bp) | 913 |
| Average genome sequence length (bp) | 509,744 |
| Genome sequence N50 (bp) | 69,945,952 |
| Genome sequence N90 (bp) | 51,948,642 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 26,092 | 26,092 |
| Others | 1,375 | 1,375 |
| Total | 27,467 | 27,467 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,913 | 2,913 |
| chr10 | 1,935 | 1,935 |
| chr11 | 2,589 | 2,589 |
| chr12 | 2,308 | 2,308 |
| chr2 | 1,853 | 1,853 |
| chr3 | 2,360 | 2,360 |
| chr4 | 2,111 | 2,111 |
| chr5 | 1,833 | 1,833 |
| chr6 | 1,737 | 1,737 |
| chr7 | 1,549 | 1,549 |
| chr8 | 1,876 | 1,876 |
| chr9 | 3,028 | 3,028 |
| Others | 1,375 | 1,375 |
| Total | 27,467 | 27,467 |