Scientific Name
Oryza
Common Names
-
Bioproject
PRJCA002366
Biosample
SAMC191984
Accession No.
GWHAZTO00000000
GSA raw reads
-
GVM variations
-
Submitter Organization
College of Horticulture, China Agricultural University
Contact
Tao Lin, lintao35@cau.edu.cn
Sequence author(s)
Jiayang Li
Released Date
2021-02-04
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Reference Genome
yes
Assembly method
CANU version1.3
Sequencing & coverage
PacBio 130.0
Download
DNA GFF RNA Protein
Publication(s)
-
Assembly Accession Assembly Name Assembly Level Release Date Download Files
GWHAZTO00000000 PPR1 Draft genome in chromosome level 2021-02-04 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 894,549,829
GC content 43.88%
Chromosomes sequence No. 24
Genome sequence No. 274
Maximum genome sequence length (bp) 50,345,809
Minimum genome sequence length (bp) 15,000
Average genome sequence length (bp) 3,264,780
Genome sequence N50 (bp) 37,066,527
Genome sequence N90 (bp) 27,781,296
Annotation of Whole Genome Assembly
Protein Pesudogene Total
Chromosome 111,443 3,185 114,628
Others 49 16 65
Total 111,492 3,201 114,693
Annotation Details
ChrID Protein Pesudogene Total
chr1 8,154 161 8,315
chr10 3,095 106 3,201
chr11 3,576 152 3,728
chr12 3,194 112 3,306
chr13 7,571 132 7,703
chr14 5,933 160 6,093
chr15 5,003 128 5,131
chr16 4,242 115 4,357
chr17 4,607 103 4,710
chr18 4,376 151 4,527
chr19 4,312 129 4,441
chr2 6,195 157 6,352
chr20 3,665 135 3,800
chr21 3,227 77 3,304
chr22 3,072 106 3,178
chr23 3,298 126 3,424
chr24 2,925 140 3,065
chr3 6,916 113 7,029
chr4 5,115 161 5,276
chr5 4,721 132 4,853
chr6 5,758 168 5,926
chr7 5,099 145 5,244
chr8 4,025 155 4,180
chr9 3,364 121 3,485
Others 49 16 65
Total 111,492 3,201 114,693