- Scientific Name
- Oryza
- Common Names
- -
- Bioproject
- PRJCA002366
- Biosample
- SAMC191984
- Accession No.
- GWHAZTO00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Horticulture, China Agricultural University
- Contact
- Tao Lin, lintao35@cau.edu.cn
- Sequence author(s)
- Jiayang Li
- Released Date
- 2021-02-04
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- CANU version1.3
- Sequencing & coverage
- PacBio 130.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 894,549,829 |
| GC content | 43.88% |
| Chromosomes sequence No. | 24 |
| Genome sequence No. | 274 |
| Maximum genome sequence length (bp) | 50,345,809 |
| Minimum genome sequence length (bp) | 15,000 |
| Average genome sequence length (bp) | 3,264,780 |
| Genome sequence N50 (bp) | 37,066,527 |
| Genome sequence N90 (bp) | 27,781,296 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Chromosome | 111,443 | 3,185 | 114,628 |
| Others | 49 | 16 | 65 |
| Total | 111,492 | 3,201 | 114,693 |
Annotation Details
| ChrID | Protein | Pseudogene | Total |
|---|---|---|---|
| chr1 | 8,154 | 161 | 8,315 |
| chr10 | 3,095 | 106 | 3,201 |
| chr11 | 3,576 | 152 | 3,728 |
| chr12 | 3,194 | 112 | 3,306 |
| chr13 | 7,571 | 132 | 7,703 |
| chr14 | 5,933 | 160 | 6,093 |
| chr15 | 5,003 | 128 | 5,131 |
| chr16 | 4,242 | 115 | 4,357 |
| chr17 | 4,607 | 103 | 4,710 |
| chr18 | 4,376 | 151 | 4,527 |
| chr19 | 4,312 | 129 | 4,441 |
| chr2 | 6,195 | 157 | 6,352 |
| chr20 | 3,665 | 135 | 3,800 |
| chr21 | 3,227 | 77 | 3,304 |
| chr22 | 3,072 | 106 | 3,178 |
| chr23 | 3,298 | 126 | 3,424 |
| chr24 | 2,925 | 140 | 3,065 |
| chr3 | 6,916 | 113 | 7,029 |
| chr4 | 5,115 | 161 | 5,276 |
| chr5 | 4,721 | 132 | 4,853 |
| chr6 | 5,758 | 168 | 5,926 |
| chr7 | 5,099 | 145 | 5,244 |
| chr8 | 4,025 | 155 | 4,180 |
| chr9 | 3,364 | 121 | 3,485 |
| Others | 49 | 16 | 65 |
| Total | 111,492 | 3,201 | 114,693 |