Scientific Name
Severe acute respiratory syndrome coronavirus 2
Common Names
-
Bioproject
PRJCA004109
Biosample
SAMC299944
Accession No.
GWHAZIS01000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
16,114 (SNP), 820 (Indel)
Submitter Organization
Jamil-ur-Rahman Center for Genome Research, Dr. Panjwani Center for Molecular Medicine and Drug Research, ICCBS, University of Karachi
Contact
Ishtiaq Khan, ishtiaqchemist@gmail.com
Sequence author(s)
Muhammad Shakeel, Muhammad Irfan, Zaibun Nisa, Muhammad Rashid, Sabeeta Ansari, Ishtiaq Khan
Released Date
2020-12-28
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
Velvet 1.0.0
Sequencing & coverage
Illumina MiSeq 95.81
Download
DNA GFF RNA Protein
Publication(s)
-
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAZIS01000000 - JRCGR-KHI27 Draft genome in chromosome level 2020-12-28 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 29,360
GC content 37.93%
Genome sequence No. 1
Maximum genome sequence length (bp) 29,360
Minimum genome sequence length (bp) 29,360
Average genome sequence length (bp) 29,360
Genome sequence N50 (bp) 29,360
Genome sequence N90 (bp) 29,360
Annotation of Whole Genome Assembly
Protein Total
Total 11 11