Genome Warehouse

Scientific Name: Trachidermus fasciatus
Common Names: roughskin sculpin;
Bioproject: PRJCA002534
Biosample: SAMC159315
Accession No.: GWHACFF00000000.2
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: -
Submitter Organization: Medical School, Nantong University
Contact: Gangcai Xie, gcxiester@gmail.com
Sequence author(s): Gangcai Xie, Dong Liu
Released Date: 2020-12-21
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: NextDenovo 2020-12
Sequencing & coverage: Nanopore 160.0
Download: DNA GFF RNA Protein
Publication(s): Gangcai Xie, et al. Nanopore Sequencing and Hi-C Based De Novo Assembly of Trachidermus fasciatusGenome. Genes. 2021, 12(5).

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHACFF00000000	-	Tfa1	Draft genome in chromosome level	2020-04-15	DNA
GWHACFF00000000.1	-	Tfa1	Draft genome in chromosome level	2020-06-04	DNA GFF RNA Protein
GWHACFF00000000.2	-	Trf1	Draft genome in chromosome level	2020-12-21	DNA GFF RNA Protein

Genome size (bp)	542,656,829
GC content	42.60%
Chromosomes sequence No.	20
Genome sequence No.	44
Maximum genome sequence length (bp)	48,280,228
Minimum genome sequence length (bp)	78,951
Average genome sequence length (bp)	12,333,110
Genome sequence N50 (bp)	24,935,520
Genome sequence N90 (bp)	20,550,679

Annotation of Whole Genome Assembly

Annotation Details