Scientific Name
human vaginal metagenome
Common Names
-
Bioproject
PRJCA003712
Biosample
SAMC273216
Accession No.
GWHAZGT00000000
GWH reannotation accession
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GSA raw reads
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GVM variations of the species
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Submitter Organization
The Institute of Metagenomics Research, BGI
Contact
Lilan Hao, haolilan@genomics.cn
Sequence author(s)
Zhuye Jie
Released Date
2021-02-28
Assembly Level
Draft genome in contig level
Genome Representation
Full Genome
Assembly method
metaSPAdes v.3.13.0
MetaBAT2 v2.12.1
Sequencing & coverage
BGISEQ-500 30
Download
DNA
Publication(s)
Zhuye Jie, et al. Life History Recorded in the Vagino-cervical Microbiome Along with Multi-omes. Genomics, Proteomics & Bioinformatics. 2022, 20(2): 304-321.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAZGT00000000 - va18_RDPYD18079420_A Draft genome in contig level 2021-02-28 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 2,442,557
GC content 36.29%
Contig sequence No. 3,734
Maximum contig sequence length (bp) 73,801
Minimum contig sequence length (bp) 201
Average contig sequence length (bp) 654
Contig N50 (bp) 1,051
Contig N90 (bp) 242