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human vaginal metagenome
va18_RDPYD18079168_A
Scientific Name
human vaginal metagenome
Common Names
-
Bioproject
PRJCA003712
Biosample
SAMC273208
Accession No.
GWHAZGL00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
The Institute of Metagenomics Research, BGI
Contact
Lilan Hao, haolilan@genomics.cn
Sequence author(s)
Zhuye Jie
Released Date
2021-02-28
Assembly Level
Draft genome in contig level
Genome Representation
Full Genome
Assembly method
metaSPAdes v.3.13.0
MetaBAT2 v2.12.1
Sequencing & coverage
BGISEQ-500 30
Download
DNA
Publication(s)
Zhuye Jie, et al. Life History Recorded in the Vagino-cervical Microbiome Along with Multi-omes. Genomics, Proteomics & Bioinformatics. 2022, 20(2): 304-321.
History
Assembly Accession
GWH Reannotation Accession
Assembly Name
Assembly Level
Released Date
Download Files
GWHAZGL00000000
-
va18_RDPYD18079168_A
Draft genome in contig level
2021-02-28
DNA
GFF
RNA
Protein
GWH
Statistics of Genome Assembly
Genome size (bp)
654,673
GC content
41.94%
Contig sequence No.
1,708
Maximum contig sequence length (bp)
2,882
Minimum contig sequence length (bp)
206
Average contig sequence length (bp)
383
Contig N50 (bp)
383
Contig N90 (bp)
223