Scientific Name
human vaginal metagenome
Common Names
-
Bioproject
PRJCA003712
Biosample
SAMC273196
Accession No.
GWHAZFZ00000000
GWH reannotation accession
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GSA raw reads
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GVM variations of the species
-
Submitter Organization
The Institute of Metagenomics Research, BGI
Contact
Lilan Hao, haolilan@genomics.cn
Sequence author(s)
Zhuye Jie
Released Date
2021-02-28
Assembly Level
Draft genome in contig level
Genome Representation
Full Genome
Assembly method
metaSPAdes v.3.13.0
MetaBAT2 v2.12.1
Sequencing & coverage
BGISEQ-500 30
Download
DNA
Publication(s)
Zhuye Jie, et al. Life History Recorded in the Vagino-cervical Microbiome Along with Multi-omes. Genomics, Proteomics & Bioinformatics. 2022, 20(2): 304-321.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAZFZ00000000 - va18_RDPYD18078837_A Draft genome in contig level 2021-02-28 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 2,394,297
GC content 39.50%
Contig sequence No. 4,012
Maximum contig sequence length (bp) 19,778
Minimum contig sequence length (bp) 205
Average contig sequence length (bp) 597
Contig N50 (bp) 758
Contig N90 (bp) 254