Scientific Name
Papaver somniferum
Common Names
opium poppy;
Bioproject
PRJCA001100
Biosample
SAMC047591
Accession No.
GWHAAFE00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
School of Electronic and Information Engineering, Xi'an Jiaotong University
Contact
Kai Ye, kaiye@xjtu.edu.cn
Sequence author(s)
Kai Ye, Ian Graham, Li Guo, Xiaofei Yang, Thilo Winzer, Yi Li, Zemin Ning, Zhesi He, Roxana Teodor, Ying Lu, Tim Bowser
Released Date
2018-10-30
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
Falcon 2017-09-01
DeNovoMAGIC 2017-06-01
ALLMAPS 2017-06-01
Sequencing & coverage
Illumina HiSeq 2500 120.0
Illumina HiSeq 4000 94.0
PacBio 68.0
Illumina HiSeqX 40.0
Download
DNA GFF RNA Protein
Publication(s)
Li Guo, et al. The opium poppy genome and morphinan production. Science. 2018, 362(6412): 343- 347.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAAFE00000000 - Opium poppy (HN1) Draft genome in chromosome level 2018-10-30 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 2,715,382,726
GC content 37.28%
Chromosomes sequence No. 11
Genome sequence No. 34,388
Maximum genome sequence length (bp) 270,405,062
Minimum genome sequence length (bp) 252
Average genome sequence length (bp) 78,963
Genome sequence N50 (bp) 204,470,928
Genome sequence N90 (bp) 9,903,009
Annotation of Whole Genome Assembly
Protein Total
Chromosome 41,770 41,770
Others 9,443 9,443
Total 51,213 51,213
Annotation Details
ChrID Protein Total
chr1 5,054 5,054
chr10 2,499 2,499
chr11 3,028 3,028
chr2 4,576 4,576
chr3 4,029 4,029
chr4 2,914 2,914
chr5 4,321 4,321
chr6 3,801 3,801
chr7 4,380 4,380
chr8 3,303 3,303
chr9 3,865 3,865
Others 9,443 9,443
Total 51,213 51,213