- Scientific Name
- Brassica rapa
- Common Names
- field mustard;
- Bioproject
- PRJCA000924
- Biosample
- SAMC044337
- Accession No.
- GWHAAES00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 11,856,138 (SNP), 4,322,343 (Indel)
- Submitter Organization
- Molecular and Genetic Laboratory, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
- Contact
- Xiaowu Wang, wangxiaowu@caas.cn
- Sequence author(s)
- Xiaowu Wang
- Released Date
- 2018-09-13
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu v1.5
- Sequencing & coverage
- PacBio 57.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Lei Zhang, et al. Improved Brassica rapa reference genome by single-molecule sequencing and chromosome conformation capture technologies. Horticulture Research. 2018, 2018(5): 50.
Statistics of Genome Assembly
| Genome size (bp) | 353,139,294 |
| GC content | 36.83% |
| Chromosomes sequence No. | 10 |
| Genome sequence No. | 1,103 |
| Maximum genome sequence length (bp) | 45,156,810 |
| Minimum genome sequence length (bp) | 2,324 |
| Average genome sequence length (bp) | 320,163 |
| Genome sequence N50 (bp) | 28,928,902 |
| Genome sequence N90 (bp) | 73,722 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 45,593 | 45,593 |
| Others | 655 | 655 |
| Total | 46,248 | 46,248 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,498 | 4,498 |
| chr10 | 3,381 | 3,381 |
| chr2 | 4,586 | 4,586 |
| chr3 | 6,552 | 6,552 |
| chr4 | 3,258 | 3,258 |
| chr5 | 4,264 | 4,264 |
| chr6 | 4,499 | 4,499 |
| chr7 | 4,329 | 4,329 |
| chr8 | 3,578 | 3,578 |
| chr9 | 6,648 | 6,648 |
| Others | 655 | 655 |
| Total | 46,248 | 46,248 |