- Scientific Name
- Glycine max
- Common Names
- soybeans; soybean; Phaseolus max
- Bioproject
- PRJCA000902
- Biosample
- SAMC044340
- Accession No.
- GWHAAEV00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR031672, CRR031683, CRR031673, CRR031684, CRR031681, more
- GVM variations of the species
- 40,350,378 (SNP), 12,368,700 (Indel)
- Submitter Organization
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Contact
- Yanting Shen, ytshen@genetics.ac.cn
- Sequence author(s)
- Yanting Shen, Jing Liu, Haiying Geng, Jixiang Zhang, Yucheng Liu, Haikuan Zhang, Shilai Xing, Jianchang Du, Shisong Ma, Zhixi Tian
- Released Date
- 2018-07-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- smrtmake -
BioNano Slove v3.0.1
HiC-Pro v2.9.0
LACHESIS - - Sequencing & coverage
- PacBio Sequel 80.0
BioNano 639.0
Illumina Hiseq X ten 125.0
Illumina HiSeq 2500 45.0 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Yanting Shen, et al. De novo assembly of a Chinese soybean genome. SCIENCE CHINA Life Sciences. 2018, 61(8):871-884.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAAEV00000000 | - | Gmax_ZH13 | Draft genome in chromosome level | 2018-07-27 |
DNA
GFF
RNA
Protein
|
| GWHAAEV00000000.1 | - | Gmax_ZH13_v2.0 | Draft genome in chromosome level | 2019-09-16 |
DNA
GFF
RNA
Protein
|
| GWHAAEV00000000.2 | - | Gmax_ZH13_v2.0 | Draft genome in chromosome level | 2024-11-21 |
|
Statistics of Genome Assembly
| Genome size (bp) | 1,020,296,243 |
| GC content | 34.98% |
| Chromosomes sequence No. | 20 |
| Organellas sequence No. | 1 |
| Genome sequence No. | 570 |
| Maximum genome sequence length (bp) | 60,216,011 |
| Minimum genome sequence length (bp) | 1,245 |
| Average genome sequence length (bp) | 1,789,993 |
| Genome sequence N50 (bp) | 51,865,536 |
| Genome sequence N90 (bp) | 40,685,020 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Total | |
|---|---|---|---|---|
| Chromosome | 57,270 | 0 | 0 | 57,270 |
| Chloroplast | 90 | 29 | 8 | 127 |
| Others | 657 | 0 | 0 | 657 |
| Total | 58,017 | 29 | 8 | 58,054 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | Total |
|---|---|---|---|---|
| chr1 | 2,477 | 0 | 0 | 2,477 |
| chr10 | 3,124 | 0 | 0 | 3,124 |
| chr11 | 2,875 | 0 | 0 | 2,875 |
| chr12 | 2,449 | 0 | 0 | 2,449 |
| chr13 | 3,860 | 0 | 0 | 3,860 |
| chr14 | 2,290 | 0 | 0 | 2,290 |
| chr15 | 2,781 | 0 | 0 | 2,781 |
| chr16 | 2,198 | 0 | 0 | 2,198 |
| chr17 | 2,787 | 0 | 0 | 2,787 |
| chr18 | 2,958 | 0 | 0 | 2,958 |
| chr19 | 2,736 | 0 | 0 | 2,736 |
| chr2 | 3,210 | 0 | 0 | 3,210 |
| chr20 | 2,614 | 0 | 0 | 2,614 |
| chr3 | 2,688 | 0 | 0 | 2,688 |
| chr4 | 2,630 | 0 | 0 | 2,630 |
| chr5 | 2,624 | 0 | 0 | 2,624 |
| chr6 | 3,315 | 0 | 0 | 3,315 |
| chr7 | 2,867 | 0 | 0 | 2,867 |
| chr8 | 3,889 | 0 | 0 | 3,889 |
| chr9 | 2,898 | 0 | 0 | 2,898 |
| Chloroplast | 90 | 29 | 8 | 127 |
| Others | 657 | 0 | 0 | 657 |
| Total | 58,017 | 29 | 8 | 58,054 |