- Scientific Name
- Fagopyrum tataricum
- Common Names
- Kangra buckwheat; Tartarian buckwheat; Polygonum tataricum
- Bioproject
- PRJCA000402
- Biosample
- SAMC012622
- Accession No.
- GWHAAEO00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR019080
- GVM variations of the species
- 4,192,470 (SNP), 944,330 (Indel)
- Submitter Organization
- Center for Genome Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
- Contact
- Huilong Du, huilongdu@genetics.ac.cn
- Sequence author(s)
- Huilong Du, Chengzhi Liang
- Released Date
- 2019-09-29
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Celera Assembler Celera Assembler v. CA 8.3rc2
null HERA version1.0 - Sequencing & coverage
- PacBio 71.0
- Download
-
DNA
- Publication(s)
- Huilong Du, et al. Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads. Nature Communications. 2019, 10(1): 5360.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAAEO00000000 | - | Fagopyrum tataricum HERA V1.0 | Draft genome in scaffold level | 2019-09-29 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 450,154,395 |
| GC content | 38.25% |
| Scaffold sequence No. | 13 |
| Maximum scaffold sequence length (bp) | 61,997,846 |
| Minimum scaffold sequence length (bp) | 413,488 |
| Average scaffold sequence length (bp) | 34,627,261 |
| Scaffold N50 (bp) | 51,779,353 |
| Scaffold N90 (bp) | 35,461,747 |