Scientific Name
human oral metagenome
Common Names
human oral microbiome
Bioproject
PRJCA003731
Biosample
SAMC261819
Accession No.
GWHAQAX00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
The Institute of Metagenomics Research, BGI
Contact
Jie Zhu, zhujie@genomics.cn
Sequence author(s)
Jie Zhu
Released Date
2020-11-30
Assembly Level
Draft genome in contig level
Genome Representation
Full Genome
Assembly method
metaSPAdes v.3.13.0
MetaBAT2 v2.12.1
Sequencing & coverage
BGISEQ-500 30
Download
DNA
Publication(s)
Jie Zhu, et al. Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa. Genomics, Proteomics & Bioinformatics. 2021.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAQAX00000000 - uSGB_3486 Draft genome in contig level 2020-11-30 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 748,643
GC content 36.42%
Contig sequence No. 171
Maximum contig sequence length (bp) 19,765
Minimum contig sequence length (bp) 1,505
Average contig sequence length (bp) 4,378
Contig N50 (bp) 5,129
Contig N90 (bp) 2,467