Scientific Name
Phacochoerus africanus
Common Names
warthog; Common warthog;
Bioproject
PRJCA002378
Biosample
SAMC146517
Accession No.
GWHACEZ00000000
GWH reannotation accession
-
GSA raw reads
CRR363283, CRR363280, CRR363281, CRR363282
GVM variations of the species
-
Submitter Organization
State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences
Contact
Hai-Bing Xie, xiehb@mail.kiz.ac.cn
Sequence author(s)
Hai-Bing Xie
Released Date
2020-04-27
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
Wtdbg2 2.3
Sequencing & coverage
Nanopore PromethION 281.71
Illumina NovaSeq 6000 263.27
Download
DNA GFF RNA Protein
Publication(s)
Haibing Xie, et al. African Suid Genomes Provide Insights into the Local Adaptation to DiverseAfrican Environments. Molecular Biology and Evolution. 2022, 39(12).
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHACEZ00000000 - Wart_1.0 Draft genome in chromosome level 2020-04-27 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 2,453,766,712
GC content 42.22%
Chromosomes sequence No. 19
Genome sequence No. 21
Maximum genome sequence length (bp) 278,089,002
Minimum genome sequence length (bp) 1,242,734
Average genome sequence length (bp) 116,846,034
Genome sequence N50 (bp) 138,295,081
Genome sequence N90 (bp) 68,747,891
Annotation of Whole Genome Assembly
Protein Total
Chromosome 20,779 20,779
Others 511 511
Total 21,290 21,290
Annotation Details
ChrID Protein Total
chr1 1,914 1,914
chr10 509 509
chr11 413 413
chr12 1,103 1,103
chr13 1,467 1,467
chr14 1,293 1,293
chr15 886 886
chr16 450 450
chr17 657 657
chr18 488 488
chr2 1,769 1,769
chr3 1,463 1,463
chr4 993 993
chr5 1,127 1,127
chr6 2,008 2,008
chr7 1,333 1,333
chr8 807 807
chr9 1,198 1,198
chrX 901 901
Others 511 511
Total 21,290 21,290