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  • Glycine max
  • SoyC11_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130409
    Accession No.
    GWHACEU00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106854, CRR106853, CRR106852, CRR106851, CRR106847,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 108.1
    Bionanol 268.4
    Hi-C 125.7
    Illumina Novaseq 6000 68.1
    Download
    DNA GFF RNA Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEU00000000 - SoyC11_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,024,483,874
    GC content 34.93%
    Chromosomes sequence No. 20
    Genome sequence No. 74
    Maximum genome sequence length (bp) 63,677,268
    Minimum genome sequence length (bp) 21,905
    Average genome sequence length (bp) 13,844,377
    Genome sequence N50 (bp) 51,368,920
    Genome sequence N90 (bp) 41,336,600
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 84,418 84,418
    Others 821 821
    Total 85,239 85,239
    Annotation Details
    ChrID Protein Total
    chr1 3,803 3,803
    chr10 4,572 4,572
    chr11 4,084 4,084
    chr12 3,716 3,716
    chr13 5,620 5,620
    chr14 3,530 3,530
    chr15 4,182 4,182
    chr16 3,238 3,238
    chr17 4,081 4,081
    chr18 4,553 4,553
    chr19 3,909 3,909
    chr2 4,661 4,661
    chr20 3,906 3,906
    chr3 3,916 3,916
    chr4 3,958 3,958
    chr5 3,807 3,807
    chr6 4,819 4,819
    chr7 4,289 4,289
    chr8 5,500 5,500
    chr9 4,274 4,274
    Others 821 821
    Total 85,239 85,239