Scientific Name
Glycine max
Common Names
soybeans; soybean; Phaseolus max
Bioproject
PRJCA002030
Biosample
SAMC130408
Accession No.
GWHACET00000000
GWH reannotation accession
-
GSA raw reads
CRR106843, CRR106842, CRR106841, CRR106840, CRR106836,
GVM variations of the species
40,350,378 (SNP), 12,368,700 (Indel)
Submitter Organization
PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Contact
Yucheng Liu, ychliu@genetics.ac.cn
Sequence author(s)
Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
Released Date
2020-04-08
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
CANU v1.7.1
HERA 2018-1
Juicer v1.5
3D-DNA version 180114
BioNano Solve v3.0.1
Sequencing & coverage
PacBio 81.8
Bionanol 323.6
Hi-C 147.5
Illumina Novaseq 6000 63.1
Download
DNA GFF RNA Protein
Publication(s)
Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHACET00000000 - SoyC10_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 1,004,895,999
GC content 34.98%
Chromosomes sequence No. 20
Genome sequence No. 66
Maximum genome sequence length (bp) 60,398,504
Minimum genome sequence length (bp) 543
Average genome sequence length (bp) 15,225,697
Genome sequence N50 (bp) 50,999,278
Genome sequence N90 (bp) 42,920,999
Annotation of Whole Genome Assembly
Protein Total
Chromosome 84,902 84,902
Others 334 334
Total 85,236 85,236
Annotation Details
ChrID Protein Total
chr1 3,821 3,821
chr10 4,555 4,555
chr11 4,203 4,203
chr12 3,703 3,703
chr13 5,655 5,655
chr14 3,574 3,574
chr15 4,192 4,192
chr16 3,233 3,233
chr17 4,159 4,159
chr18 4,456 4,456
chr19 3,993 3,993
chr2 4,729 4,729
chr20 3,926 3,926
chr3 3,923 3,923
chr4 4,060 4,060
chr5 3,887 3,887
chr6 4,770 4,770
chr7 4,342 4,342
chr8 5,530 5,530
chr9 4,191 4,191
Others 334 334
Total 85,236 85,236