Scientific Name
Glycine max
Common Names
soybeans; soybean; Phaseolus max
Bioproject
PRJCA002030
Biosample
SAMC130406
Accession No.
GWHACER00000000
GWH reannotation accession
-
GSA raw reads
CRR106821, CRR106820, CRR106814, CRR106824, CRR106823,
GVM variations of the species
40,350,378 (SNP), 12,368,700 (Indel)
Submitter Organization
PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Contact
Yucheng Liu, ychliu@genetics.ac.cn
Sequence author(s)
Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
Released Date
2020-04-08
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
CANU v1.7.1
HERA 2018-1
Juicer v1.5
3D-DNA version 180114
BioNano Solve v3.0.1
Sequencing & coverage
PacBio 81.7
Bionanol 399.5
Hi-C 112.3
Illumina Novaseq 6000 73.0
Download
DNA GFF RNA Protein
Publication(s)
Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHACER00000000 - SoyC08_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 1,002,282,097
GC content 34.98%
Chromosomes sequence No. 20
Genome sequence No. 40
Maximum genome sequence length (bp) 60,187,138
Minimum genome sequence length (bp) 10,225
Average genome sequence length (bp) 25,057,052
Genome sequence N50 (bp) 50,912,234
Genome sequence N90 (bp) 42,759,090
Annotation of Whole Genome Assembly
Protein Total
Chromosome 77,088 77,088
Others 223 223
Total 77,311 77,311
Annotation Details
ChrID Protein Total
chr1 3,483 3,483
chr10 4,248 4,248
chr11 3,902 3,902
chr12 3,422 3,422
chr13 5,094 5,094
chr14 3,331 3,331
chr15 3,860 3,860
chr16 2,974 2,974
chr17 3,689 3,689
chr18 4,230 4,230
chr19 3,720 3,720
chr2 4,248 4,248
chr20 3,240 3,240
chr3 3,588 3,588
chr4 3,729 3,729
chr5 3,581 3,581
chr6 4,367 4,367
chr7 3,951 3,951
chr8 4,745 4,745
chr9 3,686 3,686
Others 223 223
Total 77,311 77,311