logo
Advanced

  • Glycine max
  • SoyC06_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130404
    Accession No.
    GWHACEP00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106788, CRR106787, CRR106798, CRR106786, CRR106797,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 83.6
    Bionanol 365.5
    Hi-C 135.5
    Illumina Novaseq 6000 64.0
    Download
    DNA GFF RNA Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEP00000000 - SoyC06_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,007,878,726
    GC content 34.99%
    Chromosomes sequence No. 20
    Genome sequence No. 54
    Maximum genome sequence length (bp) 60,538,702
    Minimum genome sequence length (bp) 22,407
    Average genome sequence length (bp) 18,664,421
    Genome sequence N50 (bp) 52,012,534
    Genome sequence N90 (bp) 42,803,762
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 78,800 78,800
    Others 369 369
    Total 79,169 79,169
    Annotation Details
    ChrID Protein Total
    chr1 3,487 3,487
    chr10 4,203 4,203
    chr11 3,896 3,896
    chr12 3,479 3,479
    chr13 5,043 5,043
    chr14 3,432 3,432
    chr15 4,003 4,003
    chr16 2,943 2,943
    chr17 3,859 3,859
    chr18 4,287 4,287
    chr19 3,551 3,551
    chr2 4,455 4,455
    chr20 3,567 3,567
    chr3 3,536 3,536
    chr4 3,779 3,779
    chr5 3,677 3,677
    chr6 4,450 4,450
    chr7 3,937 3,937
    chr8 5,216 5,216
    chr9 4,000 4,000
    Others 369 369
    Total 79,169 79,169