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  • Glycine max
  • SoyC04_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130402
    Accession No.
    GWHACEN00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106755, CRR106766, CRR106765, CRR106764, CRR106763,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 90.1
    Bionanol 345.4
    Hi-C 116.0
    Illumina Novaseq 6000 61.2
    Download
    DNA GFF RNA Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEN00000000 - SoyC04_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,001,499,213
    GC content 34.97%
    Chromosomes sequence No. 20
    Genome sequence No. 25
    Maximum genome sequence length (bp) 60,262,442
    Minimum genome sequence length (bp) 54,302
    Average genome sequence length (bp) 40,059,969
    Genome sequence N50 (bp) 50,876,043
    Genome sequence N90 (bp) 42,719,492
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 82,797 82,797
    Others 214 214
    Total 83,011 83,011
    Annotation Details
    ChrID Protein Total
    chr1 3,640 3,640
    chr10 4,422 4,422
    chr11 4,078 4,078
    chr12 3,607 3,607
    chr13 5,545 5,545
    chr14 3,511 3,511
    chr15 4,171 4,171
    chr16 3,174 3,174
    chr17 3,973 3,973
    chr18 4,438 4,438
    chr19 3,866 3,866
    chr2 4,603 4,603
    chr20 3,721 3,721
    chr3 3,846 3,846
    chr4 3,864 3,864
    chr5 3,836 3,836
    chr6 4,710 4,710
    chr7 4,134 4,134
    chr8 5,480 5,480
    chr9 4,178 4,178
    Others 214 214
    Total 83,011 83,011