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  • Glycine max
  • SoyC01_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130399
    Accession No.
    GWHACEK00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106711, CRR106710, CRR106721, CRR106720, CRR106715,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 92.5
    Bionanol 326.8
    Hi-C 137.7
    Illumina Novaseq 6000 64.4
    Download
    DNA GFF RNA Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACEK00000000 - SoyC01_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,003,796,840
    GC content 35.01%
    Chromosomes sequence No. 20
    Genome sequence No. 30
    Maximum genome sequence length (bp) 60,114,447
    Minimum genome sequence length (bp) 5,438
    Average genome sequence length (bp) 33,459,895
    Genome sequence N50 (bp) 51,513,536
    Genome sequence N90 (bp) 43,035,250
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 75,305 75,305
    Others 238 238
    Total 75,543 75,543
    Annotation Details
    ChrID Protein Total
    chr1 3,503 3,503
    chr10 4,122 4,122
    chr11 3,458 3,458
    chr12 3,284 3,284
    chr13 4,568 4,568
    chr14 3,271 3,271
    chr15 3,530 3,530
    chr16 2,914 2,914
    chr17 3,758 3,758
    chr18 4,094 4,094
    chr19 3,526 3,526
    chr2 4,303 4,303
    chr20 3,565 3,565
    chr3 3,616 3,616
    chr4 3,458 3,458
    chr5 3,411 3,411
    chr6 4,231 4,231
    chr7 3,959 3,959
    chr8 4,865 4,865
    chr9 3,869 3,869
    Others 238 238
    Total 75,543 75,543