Scientific Name
Glycine max
Common Names
soybeans; soybean; Phaseolus max
Bioproject
PRJCA002030
Biosample
SAMC130398
Accession No.
GWHACEJ00000000
GWH reannotation accession
-
GSA raw reads
CRR106700, CRR106699, CRR106698, CRR106697, CRR106704,
GVM variations of the species
40,350,378 (SNP), 12,368,700 (Indel)
Submitter Organization
PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Contact
Yucheng Liu, ychliu@genetics.ac.cn
Sequence author(s)
Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
Released Date
2020-04-08
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
CANU v1.7.1
HERA 2018-1
Juicer v1.5
3D-DNA version 180114
BioNano Solve v3.0.1
Sequencing & coverage
PacBio 114.3
Bionanol 242.3
Hi-C 140.9
Illumina Novaseq 6000 68.1
Download
DNA GFF RNA Protein
Publication(s)
Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHACEJ00000000 - SoyL09_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 1,028,221,978
GC content 34.95%
Chromosomes sequence No. 20
Genome sequence No. 79
Maximum genome sequence length (bp) 61,504,480
Minimum genome sequence length (bp) 20,071
Average genome sequence length (bp) 13,015,468
Genome sequence N50 (bp) 51,049,556
Genome sequence N90 (bp) 41,107,028
Annotation of Whole Genome Assembly
Protein Total
Chromosome 86,216 86,216
Others 1,959 1,959
Total 88,175 88,175
Annotation Details
ChrID Protein Total
chr1 3,816 3,816
chr10 4,737 4,737
chr11 4,274 4,274
chr12 3,816 3,816
chr13 5,752 5,752
chr14 3,596 3,596
chr15 4,249 4,249
chr16 3,178 3,178
chr17 4,095 4,095
chr18 4,531 4,531
chr19 3,978 3,978
chr2 4,861 4,861
chr20 4,087 4,087
chr3 4,081 4,081
chr4 4,105 4,105
chr5 3,830 3,830
chr6 4,910 4,910
chr7 4,339 4,339
chr8 5,685 5,685
chr9 4,296 4,296
Others 1,959 1,959
Total 88,175 88,175