Scientific Name
Glycine max
Common Names
soybeans; soybean; Phaseolus max
Bioproject
PRJCA002030
Biosample
SAMC130395
Accession No.
GWHACEG00000000
GWH reannotation accession
-
GSA raw reads
CRR106645, CRR106656, CRR106644, CRR106655, CRR106643,
GVM variations of the species
40,350,378 (SNP), 12,368,700 (Indel)
Submitter Organization
PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Contact
Yucheng Liu, ychliu@genetics.ac.cn
Sequence author(s)
Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
Released Date
2020-04-08
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
CANU v1.7.1
HERA 2018-1
Juicer v1.5
3D-DNA version 180114
BioNano Solve v3.0.1
Sequencing & coverage
PacBio 88.0
Bionanol 252.3
Hi-C 133.3
Illumina Novaseq 6000 59.2
Download
DNA GFF RNA Protein
Publication(s)
Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHACEG00000000 - SoyL06_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 997,750,542
GC content 34.98%
Chromosomes sequence No. 20
Genome sequence No. 37
Maximum genome sequence length (bp) 61,561,599
Minimum genome sequence length (bp) 20,169
Average genome sequence length (bp) 26,966,231
Genome sequence N50 (bp) 50,673,940
Genome sequence N90 (bp) 42,575,228
Annotation of Whole Genome Assembly
Protein Total
Chromosome 82,696 82,696
Others 62 62
Total 82,758 82,758
Annotation Details
ChrID Protein Total
chr1 3,735 3,735
chr10 4,520 4,520
chr11 3,937 3,937
chr12 3,632 3,632
chr13 5,588 5,588
chr14 3,567 3,567
chr15 4,066 4,066
chr16 3,107 3,107
chr17 3,954 3,954
chr18 4,357 4,357
chr19 3,657 3,657
chr2 4,672 4,672
chr20 3,775 3,775
chr3 3,889 3,889
chr4 3,959 3,959
chr5 3,739 3,739
chr6 4,771 4,771
chr7 4,022 4,022
chr8 5,566 5,566
chr9 4,183 4,183
Others 62 62
Total 82,758 82,758