Scientific Name
Glycine max
Common Names
soybeans; soybean; Phaseolus max
Bioproject
PRJCA002030
Biosample
SAMC130394
Accession No.
GWHACEF00000000
GWH reannotation accession
-
GSA raw reads
CRR106634, CRR106633, CRR106632, CRR106631, CRR106638,
GVM variations of the species
40,350,378 (SNP), 12,368,700 (Indel)
Submitter Organization
PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Contact
Yucheng Liu, ychliu@genetics.ac.cn
Sequence author(s)
Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
Released Date
2020-04-08
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
CANU v1.7.1
HERA 2018-1
Juicer v1.5
3D-DNA version 180114
BioNano Solve v3.0.1
Sequencing & coverage
PacBio 98.5
Bionanol 239.4
Hi-C 118.4
Illumina Novaseq 6000 62.5
Download
DNA GFF RNA Protein
Publication(s)
Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHACEF00000000 - SoyL05_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 1,059,785,426
GC content 35.09%
Chromosomes sequence No. 20
Genome sequence No. 106
Maximum genome sequence length (bp) 60,154,980
Minimum genome sequence length (bp) 20,244
Average genome sequence length (bp) 9,997,976
Genome sequence N50 (bp) 51,173,414
Genome sequence N90 (bp) 41,484,693
Annotation of Whole Genome Assembly
Protein Total
Chromosome 79,645 79,645
Others 1,459 1,459
Total 81,104 81,104
Annotation Details
ChrID Protein Total
chr1 3,640 3,640
chr10 4,358 4,358
chr11 3,981 3,981
chr12 3,611 3,611
chr13 5,245 5,245
chr14 3,452 3,452
chr15 3,943 3,943
chr16 3,079 3,079
chr17 3,868 3,868
chr18 4,276 4,276
chr19 3,746 3,746
chr2 4,287 4,287
chr20 3,685 3,685
chr3 3,673 3,673
chr4 3,807 3,807
chr5 3,665 3,665
chr6 4,007 4,007
chr7 4,031 4,031
chr8 5,267 5,267
chr9 4,024 4,024
Others 1,459 1,459
Total 81,104 81,104