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  • Glycine max
  • SoyL03_asm
    • Scientific Name
    Glycine max
    Common Names
    soybeans; soybean; Phaseolus max
    Bioproject
    PRJCA002030
    Biosample
    SAMC130392
    Accession No.
    GWHACED00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR106601, CRR106611, CRR106610, CRR106605, CRR106604,
    GVM variations of the species
    40,350,378 (SNP), 12,368,700 (Indel)
    Submitter Organization
    PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
    Contact
    Yucheng Liu, ychliu@genetics.ac.cn
    Sequence author(s)
    Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
    Released Date
    2020-04-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    CANU v1.7.1
    HERA 2018-1
    Juicer v1.5
    3D-DNA version 180114
    BioNano Solve v3.0.1
    Sequencing & coverage
    PacBio 102.1
    Bionanol 233.9
    Hi-C 117.5
    Illumina Novaseq 6000 68.7
    Download
    DNA GFF RNA Protein
    Publication(s)
    Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHACED00000000 - SoyL03_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

    Statistics of Genome Assembly

    Genome size (bp) 1,039,512,901
    GC content 35.06%
    Chromosomes sequence No. 20
    Genome sequence No. 59
    Maximum genome sequence length (bp) 60,949,273
    Minimum genome sequence length (bp) 2,065
    Average genome sequence length (bp) 17,618,863
    Genome sequence N50 (bp) 51,324,403
    Genome sequence N90 (bp) 41,471,120
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 80,044 80,044
    Others 1,112 1,112
    Total 81,156 81,156
    Annotation Details
    ChrID Protein Total
    chr1 3,568 3,568
    chr10 4,400 4,400
    chr11 3,915 3,915
    chr12 3,632 3,632
    chr13 5,326 5,326
    chr14 3,443 3,443
    chr15 3,927 3,927
    chr16 3,081 3,081
    chr17 3,745 3,745
    chr18 4,286 4,286
    chr19 3,694 3,694
    chr2 4,332 4,332
    chr20 3,742 3,742
    chr3 3,719 3,719
    chr4 3,832 3,832
    chr5 3,723 3,723
    chr6 4,600 4,600
    chr7 3,873 3,873
    chr8 5,246 5,246
    chr9 3,960 3,960
    Others 1,112 1,112
    Total 81,156 81,156