Scientific Name
Glycine max
Common Names
soybeans; soybean; Phaseolus max
Bioproject
PRJCA002030
Biosample
SAMC130391
Accession No.
GWHACEC00000000
GWH reannotation accession
-
GSA raw reads
CRR106600, CRR106599, CRR106598, CRR106593, CRR106592,
GVM variations of the species
40,350,378 (SNP), 12,368,700 (Indel)
Submitter Organization
PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Contact
Yucheng Liu, ychliu@genetics.ac.cn
Sequence author(s)
Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
Released Date
2020-04-08
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
CANU v1.7.1
HERA 2018-1
Juicer v1.5
3D-DNA version 180114
BioNano Solve v3.0.1
Sequencing & coverage
PacBio 105.2
Bionanol 318.5
Hi-C 142.2
Illumina Novaseq 6000 59.5
Download
DNA GFF RNA Protein
Publication(s)
Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHACEC00000000 - SoyL02_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 1,011,671,057
GC content 35.06%
Chromosomes sequence No. 20
Genome sequence No. 53
Maximum genome sequence length (bp) 60,108,817
Minimum genome sequence length (bp) 9,433
Average genome sequence length (bp) 19,088,133
Genome sequence N50 (bp) 52,315,362
Genome sequence N90 (bp) 43,185,276
Annotation of Whole Genome Assembly
Protein Total
Chromosome 78,394 78,394
Others 307 307
Total 78,701 78,701
Annotation Details
ChrID Protein Total
chr1 3,697 3,697
chr10 4,260 4,260
chr11 3,897 3,897
chr12 3,516 3,516
chr13 4,837 4,837
chr14 3,469 3,469
chr15 3,693 3,693
chr16 3,013 3,013
chr17 3,773 3,773
chr18 4,195 4,195
chr19 3,768 3,768
chr2 4,465 4,465
chr20 3,333 3,333
chr3 3,838 3,838
chr4 3,662 3,662
chr5 3,531 3,531
chr6 4,350 4,350
chr7 3,869 3,869
chr8 5,259 5,259
chr9 3,969 3,969
Others 307 307
Total 78,701 78,701