Scientific Name
Glycine max
Common Names
soybeans; soybean; Phaseolus max
Bioproject
PRJCA002030
Biosample
SAMC130390
Accession No.
GWHACEB00000000
GWH reannotation accession
-
GSA raw reads
CRR106579, CRR106578, CRR106589, CRR106588, CRR106587,
GVM variations of the species
40,350,378 (SNP), 12,368,700 (Indel)
Submitter Organization
PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Contact
Yucheng Liu, ychliu@genetics.ac.cn
Sequence author(s)
Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
Released Date
2020-04-08
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
CANU v1.7.1
HERA 2018-1
Juicer v1.5
3D-DNA version 180114
BioNano Solve v3.0.1
Sequencing & coverage
PacBio 82.7
Bionanol 173.0
Hi-C 140.7
Illumina Novaseq 6000 74.4
Download
DNA GFF RNA Protein
Publication(s)
Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHACEB00000000 - SoyL01_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 999,201,382
GC content 34.99%
Chromosomes sequence No. 20
Genome sequence No. 59
Maximum genome sequence length (bp) 59,799,138
Minimum genome sequence length (bp) 20,843
Average genome sequence length (bp) 16,935,617
Genome sequence N50 (bp) 50,642,481
Genome sequence N90 (bp) 42,628,150
Annotation of Whole Genome Assembly
Protein Total
Chromosome 75,781 75,781
Others 359 359
Total 76,140 76,140
Annotation Details
ChrID Protein Total
chr1 3,503 3,503
chr10 4,223 4,223
chr11 3,908 3,908
chr12 3,418 3,418
chr13 4,416 4,416
chr14 3,421 3,421
chr15 3,507 3,507
chr16 2,985 2,985
chr17 3,797 3,797
chr18 3,974 3,974
chr19 3,307 3,307
chr2 4,344 4,344
chr20 3,186 3,186
chr3 3,709 3,709
chr4 3,650 3,650
chr5 3,476 3,476
chr6 4,565 4,565
chr7 3,923 3,923
chr8 4,763 4,763
chr9 3,706 3,706
Others 359 359
Total 76,140 76,140