Scientific Name
Glycine soja
Common Names
wild soybean;
Bioproject
PRJCA002030
Biosample
SAMC130387
Accession No.
GWHACDY00000000
GWH reannotation accession
-
GSA raw reads
CRR106535, CRR106534, CRR106533, CRR106532, CRR106536,
GVM variations of the species
-
Submitter Organization
PCCE, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Contact
Yucheng Liu, ychliu@genetics.ac.cn
Sequence author(s)
Yucheng Liu, Huilong Du, Haikuan Zhang, Yanting Shen, Hua Peng, Shulin Liu, Guo-An Zhou, Miao Shi, Pengcheng Li, Xuehui Huang, Yan Li, Min Zhang, Zheng Wang, Baoge Zhu, Bin Han, Chengzhi Liang, Zhixi Tian
Released Date
2020-04-08
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
CANU v1.7.1
HERA 2018-1
Juicer v1.5
3D-DNA version 180114
BioNano Solve v3.0.1
Sequencing & coverage
PacBio 79.3
Bionanol 218.2
Hi-C 130.6
Illumina Novaseq 6000 71.5
Download
DNA GFF RNA Protein
Publication(s)
Yucheng Liu, et al. Pan-Genome of Wild and Cultivated Soybeans. Cell. 2020.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHACDY00000000 - SoyW01_asm Draft genome in chromosome level 2020-04-08 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 1,021,346,816
GC content 35.04%
Chromosomes sequence No. 20
Genome sequence No. 52
Maximum genome sequence length (bp) 63,830,671
Minimum genome sequence length (bp) 16,745
Average genome sequence length (bp) 19,641,285
Genome sequence N50 (bp) 52,115,421
Genome sequence N90 (bp) 42,535,361
Annotation of Whole Genome Assembly
Protein Total
Chromosome 86,161 86,161
Others 186 186
Total 86,347 86,347
Annotation Details
ChrID Protein Total
chr1 3,806 3,806
chr10 4,660 4,660
chr11 4,248 4,248
chr12 3,828 3,828
chr13 5,765 5,765
chr14 3,562 3,562
chr15 4,214 4,214
chr16 3,343 3,343
chr17 4,099 4,099
chr18 4,611 4,611
chr19 4,021 4,021
chr2 4,764 4,764
chr20 3,967 3,967
chr3 4,063 4,063
chr4 3,981 3,981
chr5 3,950 3,950
chr6 4,983 4,983
chr7 4,338 4,338
chr8 5,693 5,693
chr9 4,265 4,265
Others 186 186
Total 86,347 86,347