- Scientific Name
- Salvia miltiorrhiza
- Common Names
- Chinese salvia, dan shen, redroot sage; Salvia miltiorhiza
- Bioproject
- PRJCA003150
- Biosample
- SAMC202567
- Accession No.
- GWHAOSJ00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 8,817,881 (SNP), 2,948,717 (Indel)
- Submitter Organization
- Agronomy College, Shandong Agricultural University
- Contact
- Xingfeng Li, lixf@sdau.edu.cn
- Sequence author(s)
- Zhenqiao Song
- Released Date
- 2020-09-23
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- Canu Canu v1.5
Wtbdg Wtbdg v1.2.8 - Sequencing & coverage
- PacBio 89.0
Hi-c 38.0 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Zhenqiao Song. A high-quality reference genome sequence of Salvia miltiorrhiza provides insights into tanshinone synthesis in its red rhizomes. The Plant Genome. 2020.
Statistics of Genome Assembly
| Genome size (bp) | 594,750,066 |
| GC content | 37.80% |
| Genome sequence No. | 982 |
| Maximum genome sequence length (bp) | 86,993,061 |
| Minimum genome sequence length (bp) | 2,670 |
| Average genome sequence length (bp) | 605,652 |
| Genome sequence N50 (bp) | 69,825,357 |
| Genome sequence N90 (bp) | 47,181,891 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 29,236 | 29,236 |