- Scientific Name
- Kocuria sp.
- Common Names
- -
- Bioproject
- PRJCA002403
- Biosample
- SAMC149142
- Accession No.
- GWHACCQ00000000
- GWH reannotation accession
- GWHRA_ACCQ00000000.1
- GSA raw reads
- CRR125494
- GVM variations of the species
- -
- Submitter Organization
- Bioinformatics, Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation
- Contact
- M Chen, zhchen1368@163.com
- Sequence author(s)
- M Chen
- Released Date
- 2020-03-19
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo 1.05
- Sequencing & coverage
- Illumina HiSeq 4000 404.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHACCQ00000000 | GWHRA_ACCQ00000000.1 | KCTC 49118 | Draft genome in scaffold level | 2020-03-19 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,856,335 |
| GC content | 67.05% |
| Scaffold sequence No. | 61 |
| Maximum scaffold sequence length (bp) | 297,351 |
| Minimum scaffold sequence length (bp) | 513 |
| Average scaffold sequence length (bp) | 46,825 |
| Scaffold N50 (bp) | 108,640 |
| Scaffold N90 (bp) | 31,841 |
Statistics of Genome Assembly
| Genome size (bp) | 2,856,335 |
| GC content | 67.05% |
| Scaffold sequence No. | 61 |
| Maximum scaffold sequence length (bp) | 297,351 |
| Minimum scaffold sequence length (bp) | 513 |
| Average scaffold sequence length (bp) | 46,825 |
| Scaffold N50 (bp) | 108,640 |
| Scaffold N90 (bp) | 31,841 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 2,486 | 47 | 6 | 37 | 77 | 2,653 |