Basic Information
SNP ID | osa6 |
---|---|
Organism | Oryza sativa Japonica |
Genome Assembly | IRGSP1.0 |
Version | 1 |
Variation Class | SNP |
Position | chr1:1238 |
RefSNP Alleles | C/T |
Synonyms ID |
Gene Annotation
Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
---|---|---|---|---|---|---|---|---|---|
Os01g0100100 | Os01t0100100-01 | - | upstream_gene_variant | mRNA | 0 | - => - | Os01t0100100-01 | 0 | - => - |
Population Diversity
Population | Sample # | Allele:Frequency | Genotype:Frequency |
---|---|---|---|
Indica | 2567 | C:1.00; T:0.00; | CC:1.00; TT:0.00; |
japonica | 1499 | C:1.00; T:0.00; | CC:1.00; |
Other | 635 | C:1.00; T:0.00; | CC:1.00; CT:0.00; TT:0.00; |
wild | 451 | C:0.99; T:0.01; | CC:0.99; TT:0.01; |