Basic Information
SNP ID | osa4 |
---|---|
Organism | Oryza sativa Japonica |
Genome Assembly | IRGSP1.0 |
Version | 1 |
Variation Class | SNP |
Position | chr1:1203 |
RefSNP Alleles | T/C |
Synonyms ID |
Gene Annotation
Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
---|---|---|---|---|---|---|---|---|---|
Os01g0100100 | Os01t0100100-01 | - | upstream_gene_variant | mRNA | 0 | - => - | Os01t0100100-01 | 0 | - => - |
Population Diversity
Population | Sample # | Allele:Frequency | Genotype:Frequency |
---|---|---|---|
Indica | 2567 | T:0.78; C:0.22; | TT:0.77; CC:0.21; CT:0.01; |
japonica | 1499 | T:0.98; C:0.02; | TT:0.98; CC:0.02; CT:0.00; |
Other | 635 | T:0.87; C:0.13; | TT:0.87; CC:0.12; CT:0.01; |
wild | 451 | T:0.81; C:0.19; | CT:0.01; TT:0.80; CC:0.19; |