Triticum aestivum
1. TGACv1
The assembly (TGACv1) of the genome was generated by the Earlham Institute [1]. It contains the following information:
● Number of Scaffolds: 735943
● Number of Protein-coding Genes: 104272
● Number of transcripts: 166589
● Number of Non coding genes: 10156
The assembly (IWGSC1.0) of the genome was generated by the International Wheat Genome Sequencing Consortium [2]. It contains the following information:
● Scaffolds: 22
● Contigs: 692,998
● Scaffold N50: 709,773,743
● Scaffold L50: 10
● Contig N50: 51,842
● Contig L50: 81,456
[1] Clavijo BJ, Venturini L, Schudoma C, Accinelli GG, Kaithakottil G, Wright J, Borrill P, Kettleborough G, Heavens D, Chapman H, Lipscombe J, Barker T, Lu FH, McKenzie N, Raats D, Ramirez-Gonzalez RH, Coince A, Peel N, Percival-Alwyn L, Duncan O, Trosch J, Yu G, Bolser DM, Namaati G, Kerhornou A, Spannagl M, Gundlach H, Haberer G, Davey RP, Fosker C, Palma FD, Phillips AL, Millar AH, Kersey PJ, Uauy C, Krasileva KV, Swarbreck D, Bevan MW, Clark MD: An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations. Genome Res, 27(5):885-896. [PMID=28420692]
[2] International Wheat Genome Sequencing Consortium (IWGSC): Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, 361(6403):eaar7191. [PMID=30115783]
[3] Wilkinson PA, Winfield MO, Barker GL, Tyrrell S, Bian X, Allen AM, Burridge A, Coghill JA, Waterfall C, Caccamo M, Davey RP, Edwards KJ: CerealsDB 3.0: expansion of resources and data integration. BMC Bioinformatics, 17:256. [PMID=27342803]
[4] Jordan KW, Wang S, Lun Y, Gardiner LJ, MacLachlan R, Hucl P, Wiebe K, Wong D, Forrest KL, Sharpe AG, Sidebottom CH, Hall N, Toomajian C, Close T, Dubcovsky J, Akhunova A, Talbert L, Bansal UK, Bariana HS, Hayden MJ, Pozniak C, Jeddeloh JA, Hall A, Akhunov E: A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes. Genome Biol, 16:48. [PMID=25886949]
[5] Zihao Wang, Wenxi Wang and Xiaoming Xie et al. Dispersed emergence and protracted domestication of polyploid wheat uncovered by mosaic ancestral haploblock inference. Nat Commun, 13(1):3891. [PMID= 35794156]
[6] Tingting Zhu, Le Wang and Hélène Rimbert et al. Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly. The Plant journal, 107(1):303-314. [PMID= 33893684]