Standards
1.3.3 Run
Attributes*mandatory attribute
Name Description Tips Value Format
*ID Run IDs, prefixed with 'R' and followed by a natural number such as: R1, R2, R3... The Run ID must be unique.
*Run title Short description that will identify the Run on public pages. It can have any format, but we suggest that you make it concise, unique and consistent and as informative as possible. Every Run from same Experiment must be unique. {text}
*BioProject accession BioProject accession. Typical of the form PRJCA [number], NOT SubPRJCA [number], like PRJCA000005. PRJCA[number]
*Experiment ID Experiment IDs, prefixed with 'E' and followed by a natural number, such as E1, E2, E3…
*Run data file type This column has drop-down menus that allow you to select from a controlled vocabulary.
*File name 1 All data file names must be unique without spaces, brackets, periods, or forward (/) or backward slashes (\). 1.Fastq format can be compressed using gzip or bzip2 (and DOES NOT accepts zip or rar).
2.BAM format do not compress.
3.PacBio sequel and Ion Torrent series sequencers can upload tar compression format.
4.Doublecheck that your file names is accurate before sending to us.
*MD5 checksum 1 MD5 checksums are a 32-character alphanumeric string. 1. For Mac and Linux system users, the native command line tools "md5sum"(Linux) and "md5"(Mac OX) can be used to generate MD5 checksums.
2.Windows users must need to download a third-party utility, like winmd5free.
32-character alphanumeric string
File name 2 All data file names must be unique without spaces, brackets, periods, or forward (/) or backward slashes (\). Those fields require for paired-end data only.
MD5 checksum 2 MD5 checksums are a 32-character alphanumeric string. 32-character alphanumeric string
Reference file name Reference name. When your Run data file type select BAM format.
1. If you want to submit your reference file to our FTP Site, you need to fill in the reference_name and reference_md5. We only accept Fasta file under GZIP and BZIP2 compression formats;
2. If your reference file is already in other database, please fill in the Assembly Name or Accession and Assembly Accession URL.
3.PacBio sequel and Ion Torrent series sequencers leave this column empty is available.
MD5 for reference file MD5 for reference file. 32-character alphanumeric string
Assembly Name or Accession Assembly Name or Accession.
Assembly Accession URL Assembly Accession URL. URL