CRA003648 Information
Title: Surveillance and whole genome sequencing of Human Norovirus and other Foodborne viruses from inbound passengers monitored by Shanghai Customs China during 2018
BioProject: PRJCA004050 /
Release date: 2021-01-06
Files: 166
File size: 131.56 GB
Publication
Journal name
Travel Medicine and Infectious Disease
Year
2021
DOI
10.1016/j.tmaid.2021.102140
PubMed ID
34271206

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX197264 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1879 Norovirus Illumina HiSeq X Ten SAMC297015
Run accession Run alias Run data file information
CRR230111 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1879 File: CRR230111_f1.fastq.gz
File: CRR230111_r2.fastq.gz
CRX197263 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1878 Norovirus Illumina HiSeq X Ten SAMC297014
Run accession Run alias Run data file information
CRR230110 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1878 File: CRR230110_f1.fastq.gz
File: CRR230110_r2.fastq.gz
CRX197262 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1877 Norovirus Illumina HiSeq X Ten SAMC297013
Run accession Run alias Run data file information
CRR230109 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1877 File: CRR230109_f1.fastq.gz
File: CRR230109_r2.fastq.gz
CRX197261 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1876 Norovirus Illumina HiSeq X Ten SAMC297012
Run accession Run alias Run data file information
CRR230108 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1876 File: CRR230108_f1.fastq.gz
File: CRR230108_r2.fastq.gz
CRX197260 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1875 Norovirus Illumina HiSeq X Ten SAMC297011
Run accession Run alias Run data file information
CRR230107 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1875 File: CRR230107_f1.fastq.gz
File: CRR230107_r2.fastq.gz
CRX197259 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1874 Norovirus Illumina HiSeq X Ten SAMC297010
Run accession Run alias Run data file information
CRR230106 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1874 File: CRR230106_f1.fastq.gz
File: CRR230106_r2.fastq.gz
CRX197258 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1863 Norovirus Illumina HiSeq X Ten SAMC297009
Run accession Run alias Run data file information
CRR230105 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1863 File: CRR230105_f1.fastq.gz
File: CRR230105_r2.fastq.gz
CRX197257 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1859 Norovirus Illumina HiSeq X Ten SAMC297008
Run accession Run alias Run data file information
CRR230104 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1859 File: CRR230104_f1.fastq.gz
File: CRR230104_r2.fastq.gz
CRX197256 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1855 Norovirus Illumina HiSeq X Ten SAMC297007
Run accession Run alias Run data file information
CRR230103 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1855 File: CRR230103_f1.fastq.gz
File: CRR230103_r2.fastq.gz
CRX197255 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1853 Norovirus Illumina HiSeq X Ten SAMC297006
Run accession Run alias Run data file information
CRR230102 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1853 File: CRR230102_f1.fastq.gz
File: CRR230102_r2.fastq.gz
CRX197254 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1851 Norovirus Illumina HiSeq X Ten SAMC297005
Run accession Run alias Run data file information
CRR230101 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1851 File: CRR230101_f1.fastq.gz
File: CRR230101_r2.fastq.gz
CRX197253 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1848 Norovirus Illumina HiSeq X Ten SAMC297004
Run accession Run alias Run data file information
CRR230100 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1848 File: CRR230100_f1.fastq.gz
File: CRR230100_r2.fastq.gz
CRX197252 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1840 Norovirus Illumina HiSeq X Ten SAMC297003
Run accession Run alias Run data file information
CRR230099 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1840 File: CRR230099_f1.fastq.gz
File: CRR230099_r2.fastq.gz
CRX197251 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Germany_SCD1779 Norovirus Illumina HiSeq X Ten SAMC297002
Run accession Run alias Run data file information
CRR230098 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Germany_SCD1779 File: CRR230098_f1.fastq.gz
File: CRR230098_r2.fastq.gz
CRX197250 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Indonesia_SCD1721 Norovirus Illumina HiSeq X Ten SAMC297001
Run accession Run alias Run data file information
CRR230097 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Indonesia_SCD1721 File: CRR230097_f1.fastq.gz
File: CRR230097_r2.fastq.gz
CRX197249 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1711 Norovirus Illumina HiSeq X Ten SAMC297000
Run accession Run alias Run data file information
CRR230096 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1711 File: CRR230096_f1.fastq.gz
File: CRR230096_r2.fastq.gz
CRX197248 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Japan_SCD1695 Norovirus Illumina HiSeq X Ten SAMC296999
Run accession Run alias Run data file information
CRR230095 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Japan_SCD1695 File: CRR230095_f1.fastq.gz
File: CRR230095_r2.fastq.gz
CRX197247 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1684 Norovirus Illumina HiSeq X Ten SAMC296998
Run accession Run alias Run data file information
CRR230094 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1684 File: CRR230094_f1.fastq.gz
File: CRR230094_r2.fastq.gz
CRX197246 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Sabah_SCD1613 Norovirus Illumina HiSeq X Ten SAMC296997
Run accession Run alias Run data file information
CRR230093 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Sabah_SCD1613 File: CRR230093_f1.fastq.gz
File: CRR230093_r2.fastq.gz
CRX197245 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Cambodia_SCD1605 Norovirus Illumina HiSeq X Ten SAMC296996
Run accession Run alias Run data file information
CRR230092 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Cambodia_SCD1605 File: CRR230092_f1.fastq.gz
File: CRR230092_r2.fastq.gz
Submitter:Danlei Liu (liudanlei@sjtu.edu.cn)
Organization:Shanghai jiaotong university
Date submitted:2020-12-13