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CRA001237 Information
Title: Whole-Genome Sequencing of Escherichia coli
BioProject: PRJCA001033 /
Release date: 2018-12-11
Files: 158
File size: 15.52 GB
Publication
Article title
Genomes of Escherichia coli bacteraemia isolates originating from urinary tract foci contain more virulence-associated genes than those from non-urinary foci and neutropaenic hosts
Journal name
Journal of Infection
Year
2018
DOI
10.1016/j.jinf.2018.10.011
PubMed ID
30391630

Dataset Downlaod
MetaData:
CRA001237.xlsx
Files:
HTTPS：https://download.cncb.ac.cn/gsa/CRA001237
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FTP：ftp://download.big.ac.cn/gsa/CRA001237

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX032625 4 bacteraemia isolate urinary source Escherichia coli Illumina HiSeq 2000 SAMC048168
Run accession Run alias Run data file information
CRR036804 Dale_Ec_Col 68 File: CRR036804_f1.fastq.gz
File: CRR036804_r2.fastq.gz
CRX032624 3 bacteraemia isolate urinary source Escherichia coli Illumina HiSeq 2000 SAMC048167
Run accession Run alias Run data file information
CRR036803 Dale_Ec_Col 67 File: CRR036803_f1.fastq.gz
File: CRR036803_r2.fastq.gz
CRX032623 2 bacteraemia isolate urinary source Escherichia coli Illumina HiSeq 2000 SAMC048166
Run accession Run alias Run data file information
CRR036802 Dale_Ec_Col 66 File: CRR036802_f1.fastq.gz
File: CRR036802_r2.fastq.gz
CRX032622 1 bacteraemia isolate urinary source Escherichia coli Illumina HiSeq 2000 SAMC048165
Run accession Run alias Run data file information
CRR036801 Dale_Ec_Col 65 File: CRR036801_f1.fastq.gz
File: CRR036801_r2.fastq.gz
CRX032621 51 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048164
Run accession Run alias Run data file information
CRR036800 Dale_Ec_Col 64 File: CRR036800_f1.fastq.gz
File: CRR036800_r2.fastq.gz
CRX032620 50 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048163
Run accession Run alias Run data file information
CRR036799 Dale_Ec_Col 63 File: CRR036799_f1.fastq.gz
File: CRR036799_r2.fastq.gz
CRX032619 49 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048162
Run accession Run alias Run data file information
CRR036798 Dale_Ec_Col 62 File: CRR036798_f1.fastq.gz
File: CRR036798_r2.fastq.gz
CRX032618 48 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048161
Run accession Run alias Run data file information
CRR036797 Dale_Ec_Col 61 File: CRR036797_f1.fastq.gz
File: CRR036797_r2.fastq.gz
CRX032617 47 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048160
Run accession Run alias Run data file information
CRR036796 Dale_Ec_Col 60 File: CRR036796_f1.fastq.gz
File: CRR036796_r2.fastq.gz
CRX032616 46 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048159
Run accession Run alias Run data file information
CRR036795 Dale_Ec_Col 59 File: CRR036795_f1.fastq.gz
File: CRR036795_r2.fastq.gz
CRX032615 45 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048158
Run accession Run alias Run data file information
CRR036794 Dale_Ec_Col 58 File: CRR036794_f1.fastq.gz
File: CRR036794_r2.fastq.gz
CRX032614 44 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048157
Run accession Run alias Run data file information
CRR036793 Dale_Ec_Col 57 File: CRR036793_f1.fastq.gz
File: CRR036793_r2.fastq.gz
CRX032613 43 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048156
Run accession Run alias Run data file information
CRR036792 Dale_Ec_Col 56 File: CRR036792_f1.fastq.gz
File: CRR036792_r2.fastq.gz
CRX032612 42 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048155
Run accession Run alias Run data file information
CRR036791 Dale_Ec_Col 55 File: CRR036791_f1.fastq.gz
File: CRR036791_r2.fastq.gz
CRX032611 41 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048154
Run accession Run alias Run data file information
CRR036790 Dale_Ec_Col 54 File: CRR036790_f1.fastq.gz
File: CRR036790_r2.fastq.gz
CRX032610 40 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048153
Run accession Run alias Run data file information
CRR036789 Dale_Ec_Col 53 File: CRR036789_f1.fastq.gz
File: CRR036789_r2.fastq.gz
CRX032609 39 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048152
Run accession Run alias Run data file information
CRR036788 Dale_Ec_Col 52 File: CRR036788_f1.fastq.gz
File: CRR036788_r2.fastq.gz
CRX032608 38 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048151
Run accession Run alias Run data file information
CRR036787 Dale_Ec_Col 51 File: CRR036787_f1.fastq.gz
File: CRR036787_r2.fastq.gz
CRX032607 37 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048150
Run accession Run alias Run data file information
CRR036786 Dale_Ec_Col 50 File: CRR036786_f1.fastq.gz
File: CRR036786_r2.fastq.gz
CRX032606 36 bacteraemia isolate other source Escherichia coli Illumina HiSeq 2000 SAMC048149
Run accession Run alias Run data file information
CRR040073 Dale_Ec_Col 49 File: CRR040073_f1.fastq.gz
File: CRR040073_r2.fastq.gz
Submitter:Anish Kumar Pandey (anishkumarpandey89@gmail.com)
Organization:University of Southampton
Date submitted:2018-11-19