CRA003648 Information
Title: Surveillance and whole genome sequencing of Human Norovirus and other Foodborne viruses from inbound passengers monitored by Shanghai Customs China during 2018
BioProject: PRJCA004050 /
Release date: 2021-01-06
Files: 166
File size: 131.56 GB
Publication
Journal name
Travel Medicine and Infectious Disease
Year
2021
DOI
10.1016/j.tmaid.2021.102140
PubMed ID
34271206

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX197284 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1983 Norovirus Illumina HiSeq X Ten SAMC297035
Run accession Run alias Run data file information
CRR230131 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1983 File: CRR230131_f1.fastq.gz
File: CRR230131_r2.fastq.gz
CRX197283 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1979 Norovirus Illumina HiSeq X Ten SAMC297034
Run accession Run alias Run data file information
CRR230130 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1979 File: CRR230130_f1.fastq.gz
File: CRR230130_r2.fastq.gz
CRX197282 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1949 Norovirus Illumina HiSeq X Ten SAMC297033
Run accession Run alias Run data file information
CRR230129 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1949 File: CRR230129_f1.fastq.gz
File: CRR230129_r2.fastq.gz
CRX197281 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Source not collected_SCD1931 Norovirus Illumina HiSeq X Ten SAMC297032
Run accession Run alias Run data file information
CRR230128 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Source not collected_SCD1931 File: CRR230128_f1.fastq.gz
File: CRR230128_r2.fastq.gz
CRX197280 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1916 Norovirus Illumina HiSeq X Ten SAMC297031
Run accession Run alias Run data file information
CRR230127 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1916 File: CRR230127_f1.fastq.gz
File: CRR230127_r2.fastq.gz
CRX197279 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1914 Norovirus Illumina HiSeq X Ten SAMC297030
Run accession Run alias Run data file information
CRR230126 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1914 File: CRR230126_f1.fastq.gz
File: CRR230126_r2.fastq.gz
CRX197278 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1911 Norovirus Illumina HiSeq X Ten SAMC297029
Run accession Run alias Run data file information
CRR230125 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1911 File: CRR230125_f1.fastq.gz
File: CRR230125_r2.fastq.gz
CRX197277 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1910 Norovirus Illumina HiSeq X Ten SAMC297028
Run accession Run alias Run data file information
CRR230124 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1910 File: CRR230124_f1.fastq.gz
File: CRR230124_r2.fastq.gz
CRX197276 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1909 Norovirus Illumina HiSeq X Ten SAMC297027
Run accession Run alias Run data file information
CRR230123 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1909 File: CRR230123_f1.fastq.gz
File: CRR230123_r2.fastq.gz
CRX197275 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1908 Norovirus Illumina HiSeq X Ten SAMC297026
Run accession Run alias Run data file information
CRR230122 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1908 File: CRR230122_f1.fastq.gz
File: CRR230122_r2.fastq.gz
CRX197274 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1907 Norovirus Illumina HiSeq X Ten SAMC297025
Run accession Run alias Run data file information
CRR230121 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1907 File: CRR230121_f1.fastq.gz
File: CRR230121_r2.fastq.gz
CRX197273 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1905 Norovirus Illumina HiSeq X Ten SAMC297024
Run accession Run alias Run data file information
CRR230120 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1905 File: CRR230120_f1.fastq.gz
File: CRR230120_r2.fastq.gz
CRX197272 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Vietnam_SCD1899 Norovirus Illumina HiSeq X Ten SAMC297023
Run accession Run alias Run data file information
CRR230119 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Vietnam_SCD1899 File: CRR230119_f1.fastq.gz
File: CRR230119_r2.fastq.gz
CRX197271 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1896 Norovirus Illumina HiSeq X Ten SAMC297022
Run accession Run alias Run data file information
CRR230118 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1896 File: CRR230118_f1.fastq.gz
File: CRR230118_r2.fastq.gz
CRX197270 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1895 Norovirus Illumina HiSeq X Ten SAMC297021
Run accession Run alias Run data file information
CRR230117 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1895 File: CRR230117_f1.fastq.gz
File: CRR230117_r2.fastq.gz
CRX197269 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1890 Norovirus Illumina HiSeq X Ten SAMC297020
Run accession Run alias Run data file information
CRR230116 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1890 File: CRR230116_f1.fastq.gz
File: CRR230116_r2.fastq.gz
CRX197268 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Source not collected_SCD1883 Norovirus Illumina HiSeq X Ten SAMC297019
Run accession Run alias Run data file information
CRR230115 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Source not collected_SCD1883 File: CRR230115_f1.fastq.gz
File: CRR230115_r2.fastq.gz
CRX197267 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1882 Norovirus Illumina HiSeq X Ten SAMC297018
Run accession Run alias Run data file information
CRR230114 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1882 File: CRR230114_f1.fastq.gz
File: CRR230114_r2.fastq.gz
CRX197266 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1881 Norovirus Illumina HiSeq X Ten SAMC297017
Run accession Run alias Run data file information
CRR230113 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1881 File: CRR230113_f1.fastq.gz
File: CRR230113_r2.fastq.gz
CRX197265 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1880 Norovirus Illumina HiSeq X Ten SAMC297016
Run accession Run alias Run data file information
CRR230112 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1880 File: CRR230112_f1.fastq.gz
File: CRR230112_r2.fastq.gz
Submitter:Danlei Liu (liudanlei@sjtu.edu.cn)
Organization:Shanghai jiaotong university
Date submitted:2020-12-13