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CRA006888 Information

Title: De novo Genome Assembly Depicts the Immune Genomic Characteristics of Cattle

BioProject: PRJCA008887 /

Release date: 2023-09-12

Files: 22

File size: 479.78 GB

Publication

Article title

De novo genome assembly depicts the immune genomic characteristics of cattle

Journal name

Nature Communications

Year

2023

DOI

10.1038/s41467-023-42161-1

PubMed ID

37857610

Dataset Downlaod

MetaData:

CRA006888.xlsx

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Experiments & Runs

Experiment accession	Title	Taxon name	Platform	Sample accession
CRX417573	cattle01_RNAseq	Bos taurus	Illumina HiSeq X Ten	SAMC754781
Run accession	Run alias		Run data file information
CRR476875	cattle01_RNAseq-1		File: CRR476875_f1.fq.gz File: CRR476875_r2.fq.gz
CRR476876	cattle01_RNAseq-2		File: CRR476876_f1.fq.gz File: CRR476876_r2.fq.gz
CRR476877	cattle01_RNAseq-3		File: CRR476877_f1.fq.gz File: CRR476877_r2.fq.gz
CRX417572	cattle01_HiC	Bos taurus	Illumina HiSeq X Ten	SAMC754782
Run accession	Run alias		Run data file information
CRR476869	cattle01_HiC-1		File: CRR476869_f1.fq.gz File: CRR476869_r2.fq.gz
CRR476870	cattle01_HiC-2		File: CRR476870_f1.fq.gz File: CRR476870_r2.fq.gz
CRR476871	cattle01_HiC-3		File: CRR476871_f1.fq.gz File: CRR476871_r2.fq.gz
CRR476872	cattle01_HiC-4		File: CRR476872_f1.fq.gz File: CRR476872_r2.fq.gz
CRR476873	cattle01_HiC-5		File: CRR476873_f1.fq.gz File: CRR476873_r2.fq.gz
CRR476874	cattle01_HiC-6		File: CRR476874_f1.fq.gz File: CRR476874_r2.fq.gz
CRX417571	cattle01_NGS	Bos taurus	Illumina HiSeq X Ten	SAMC754780
Run accession	Run alias		Run data file information
CRR476868	cattle01_NGS-1		File: CRR476868_f1.fq.gz File: CRR476868_r2.fq.gz
CRX417570	cattle01_PacBio	Bos taurus	Pacbio Sequel II	SAMC754780
Run accession	Run alias		Run data file information
CRR476867	cattle01_PacBio-1		File: CRR476867.bam
CRX417569	cattle01_ONT	Bos taurus	OXFORD_NANOPORE PromethION	SAMC754780
Run accession	Run alias		Run data file information
CRR476866	cattle01_ONT-1		File: CRR476866.bam

Submitter:Jiaqi Wu (lab@xmail.ncba.ac.cn)

Organization:Institute of Basic Medical Sciences

Date submitted:2022-05-10