CRA003648 Information
Title: Surveillance and whole genome sequencing of Human Norovirus and other Foodborne viruses from inbound passengers monitored by Shanghai Customs China during 2018
BioProject: PRJCA004050 / CRP002406
Release date: 2021-01-06
Experiments & Runs
Experiment accession Title Organism Platform Sample accession
CRX197284 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1983 Norovirus Illumina HiSeq X Ten SAMC297035
CRS163875
Run accession Run alias Run data file information
CRR230131 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1983 File: CRR230131_f1.fastq.gz
File: CRR230131_r2.fastq.gz
CRX197283 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1979 Norovirus Illumina HiSeq X Ten SAMC297034
CRS163874
Run accession Run alias Run data file information
CRR230130 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1979 File: CRR230130_f1.fastq.gz
File: CRR230130_r2.fastq.gz
CRX197282 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1949 Norovirus Illumina HiSeq X Ten SAMC297033
CRS163873
Run accession Run alias Run data file information
CRR230129 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1949 File: CRR230129_f1.fastq.gz
File: CRR230129_r2.fastq.gz
CRX197281 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Source not collected_SCD1931 Norovirus Illumina HiSeq X Ten SAMC297032
CRS163872
Run accession Run alias Run data file information
CRR230128 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Source not collected_SCD1931 File: CRR230128_f1.fastq.gz
File: CRR230128_r2.fastq.gz
CRX197280 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1916 Norovirus Illumina HiSeq X Ten SAMC297031
CRS163871
Run accession Run alias Run data file information
CRR230127 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1916 File: CRR230127_f1.fastq.gz
File: CRR230127_r2.fastq.gz
CRX197279 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1914 Norovirus Illumina HiSeq X Ten SAMC297030
CRS163870
Run accession Run alias Run data file information
CRR230126 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1914 File: CRR230126_f1.fastq.gz
File: CRR230126_r2.fastq.gz
CRX197278 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1911 Norovirus Illumina HiSeq X Ten SAMC297029
CRS163869
Run accession Run alias Run data file information
CRR230125 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1911 File: CRR230125_f1.fastq.gz
File: CRR230125_r2.fastq.gz
CRX197277 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1910 Norovirus Illumina HiSeq X Ten SAMC297028
CRS163868
Run accession Run alias Run data file information
CRR230124 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1910 File: CRR230124_f1.fastq.gz
File: CRR230124_r2.fastq.gz
CRX197276 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1909 Norovirus Illumina HiSeq X Ten SAMC297027
CRS163867
Run accession Run alias Run data file information
CRR230123 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1909 File: CRR230123_f1.fastq.gz
File: CRR230123_r2.fastq.gz
CRX197275 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1908 Norovirus Illumina HiSeq X Ten SAMC297026
CRS163866
Run accession Run alias Run data file information
CRR230122 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1908 File: CRR230122_f1.fastq.gz
File: CRR230122_r2.fastq.gz
CRX197274 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1907 Norovirus Illumina HiSeq X Ten SAMC297025
CRS163865
Run accession Run alias Run data file information
CRR230121 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1907 File: CRR230121_f1.fastq.gz
File: CRR230121_r2.fastq.gz
CRX197273 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1905 Norovirus Illumina HiSeq X Ten SAMC297024
CRS163864
Run accession Run alias Run data file information
CRR230120 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1905 File: CRR230120_f1.fastq.gz
File: CRR230120_r2.fastq.gz
CRX197272 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Vietnam_SCD1899 Norovirus Illumina HiSeq X Ten SAMC297023
CRS163863
Run accession Run alias Run data file information
CRR230119 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Vietnam_SCD1899 File: CRR230119_f1.fastq.gz
File: CRR230119_r2.fastq.gz
CRX197271 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1896 Norovirus Illumina HiSeq X Ten SAMC297022
CRS163862
Run accession Run alias Run data file information
CRR230118 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1896 File: CRR230118_f1.fastq.gz
File: CRR230118_r2.fastq.gz
CRX197270 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1895 Norovirus Illumina HiSeq X Ten SAMC297021
CRS163861
Run accession Run alias Run data file information
CRR230117 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1895 File: CRR230117_f1.fastq.gz
File: CRR230117_r2.fastq.gz
CRX197269 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Thailand_SCD1890 Norovirus Illumina HiSeq X Ten SAMC297020
CRS163860
Run accession Run alias Run data file information
CRR230116 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Thailand_SCD1890 File: CRR230116_f1.fastq.gz
File: CRR230116_r2.fastq.gz
CRX197268 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_Source not collected_SCD1883 Norovirus Illumina HiSeq X Ten SAMC297019
CRS163859
Run accession Run alias Run data file information
CRR230115 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_Source not collected_SCD1883 File: CRR230115_f1.fastq.gz
File: CRR230115_r2.fastq.gz
CRX197267 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1882 Norovirus Illumina HiSeq X Ten SAMC297018
CRS163858
Run accession Run alias Run data file information
CRR230114 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1882 File: CRR230114_f1.fastq.gz
File: CRR230114_r2.fastq.gz
CRX197266 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1881 Norovirus Illumina HiSeq X Ten SAMC297017
CRS163857
Run accession Run alias Run data file information
CRR230113 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1881 File: CRR230113_f1.fastq.gz
File: CRR230113_r2.fastq.gz
CRX197265 Metagenomic sequencing of Norovirus positive clinical samples_Shanghai Customs District,China_2018_India_SCD1880 Norovirus Illumina HiSeq X Ten SAMC297016
CRS163856
Run accession Run alias Run data file information
CRR230112 Raw data of Norovirus positive samples_Shanghai Customs District,China_2018_India_SCD1880 File: CRR230112_f1.fastq.gz
File: CRR230112_r2.fastq.gz
Submitter:Danlei Liu (liudanlei@163.com)
Organizations:shanghai jiaotong university
Date submitted:2020-12-13