| Accession | CRX104256 |
| Organism | Oryza meyeriana var. granulata |
| Title | RNA sequencing of Oryza granulata (GF) |
| BioProject | PRJCA001328 |
| BioSample | SAMC155197 |
| Platform | Illumina HiSeq 2500 |
| Library |
| Library name |
Construction protocol |
Strategy |
Source |
Selection |
Layout |
|
A total of seven tissues representing different developmental stages of Oryza granulate were sampled to generate the RNA-Seq data needed for subsequent genome annotation. These tissues included panicles at three different stages of flower development, flag leaves, and stems and the shoots and roots of three-leaf seedlings. Because of the low germination rate of O. granulata, seedlings were germinated from seeds harvested from multiple plants, while the remaining tissues were sampled from the individual used for genome sequencing. All collected samples were quickly frozen in liquid nitrogen. RNA was individually extracted from each tissue using TRI reagent according to the instructions provided with the reagents. |
WGS |
TRANSCRIPTOMIC |
PCR |
PAIRED
|
|
| Processing |
Planned read length (bp) for mate 1: 126
Planned read length (bp) for mate 2: 126
Insert size (bp): 180
|
| Release date | 2020-04-13 |
|---|
| Run |
| Run accession |
Run data file information |
| File name | File size (MB) |
|---|
| CRR128818 |
CRR128818_f1.fq.gz
CRR128818_r2.fq.gz
|
1,660.28
1,612.23
|
|
| Submitter | Wei Li (liweisdau@126.com) |
|---|
| Organization | South China Agricultural University |
|---|
| Date submitted | 2020-04-13 |
|---|
English
中文
Français