Experiment information
Accession CRX075484
Organism Populus x canadensis
Title Populus x canadensis 1
BioProject PRJCA001976
BioSample SAMC117061
Platform Illumina HiSeq 2500
Library
Library name Construction protocol Strategy Source Selection Layout
Total RNA of samples was extracted by the CTAB method. The quality and quantity of each RNA sample were assessed by the NanoDrop 2000 and the Agilent 2100 Bioanalyzer. Only RNA samples with absorption 260/280 ratios from 1.9 to 2.2, 260/230 ratios from 2.0 to 2.5, and RNA integrity number values greater than 6.8 were used for subsequent experiments. The mRNA was enriched by binding of A-T complementary pairing to the plasmidA tail of mRNA after the sample was tested and the magnetic beads with Oligo were used. The fragmentation buffer was added to break the mRNA into short fragments. We used mRNA as a template and then synthesized a single-stranded cDNA using random hexamers. We added buffer, dNTPs and DNA polymerase I to synthesize two-stranded cDNA. The double-stranded cDNA was purified using AMPure XP beads and subjected to end repair, addition of A tail, ligation of the sequencing linker, and fragment size selection. Finally, PCR enrichment was performed to obtain a final cDNA library. RNA-Seq TRANSCRIPTOMIC RT-PCR PAIRED
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Insert size (bp): 275
Release date2019-12-10
Run
Run accession Release date Run data file information
File nameFile size (MB)
CRR088507 2019-12-10 pcq1_1.fq.gz
pcq1_2.fq.gz
2,631.29
2,779.61
Submitterjiahong xu  (jiahongxuhn@sina.com)
OrganizationsHainan University
Date submitted2019-11-30
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