Experiment information
Accession CRX064190
Organism Solanum tuberosum
Title E3
BioProject PRJCA001763
BioSample SAMC109747
Platform OXFORD_NANOPORE GridION
Library
Library name Construction protocol Strategy Source Selection Layout
The high-molecular-weight DNA (12 -20 kb in length) was extracted from in vitro seedlings based on the Oxford Nanopore\'s \'\'1D gDNA selection for long reads\'\' protocol. The library was constructed using LSK108 kit and sequenced using 38 R9.4 flow cells on the Nanopore GridION X5 sequencer. The base calling was perfromed using Albacore in MinKNOW package. WGS GENOMIC size fractionation FRAGMENT
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Insert size (bp): 300
Planned read length (bp): 150
Release date2019-11-02
Run
Run accession Release date Run data file information
File nameFile size (MB)
CRR075040 2019-11-02 20180119_NPL0035_G5.fq.gz 4,018.16
CRR075041 2019-11-02 20180120_NPL0035_D1.fq.gz 2,294.37
CRR075042 2019-11-02 20180122_NPL0035_A1.fq.gz 3,036.92
CRR075043 2019-11-02 20180122_NPL0035_A3.fq.gz 5,160.08
CRR075044 2019-11-02 20180122_NPL0035_A4.fq.gz 5,439.47
CRR075045 2019-11-02 20180122_NPL0035_A5.fq.gz 3,556.33
CRR075046 2019-11-02 20180122_NPL0035_B3.fq.gz 4,799.1
CRR075047 2019-11-02 20180122_NPL0035_G1.fq.gz 1,754.83
CRR075048 2019-11-02 20180123_NPL0035_G2.fq.gz 1,400.81
CRR075049 2019-11-02 20180123_NPL0035_G3.fq.gz 1,046
CRR075050 2019-11-02 20180123_NPL0035_G4.fq.gz 1,710.04
CRR075051 2019-11-02 20180123_NPL0035_G5.fq.gz 2,296.21
CRR075052 2019-11-02 20180120_NPL0035_A5.fq.gz 1,793.03
CRR075053 2019-11-02 20180120_NPL0035_M0.fq.gz 2,168.21
CRR075054 2019-11-02 20180130_NPL0035_C1.fq.gz 3,783.91
CRR075055 2019-11-02 20180130_NPL0035_C2.fq.gz 4,416.92
CRR075056 2019-11-02 20180130_NPL0035_C3.fq.gz 3,027.1
CRR075057 2019-11-02 20180130_NPL0035_D1.fq.gz 4,518.93
CRR075058 2019-11-02 20180130_NPL0035_D2.fq.gz 4,753.12
CRR075059 2019-11-02 20180130_NPL0035_D3.fq.gz 4,194.55
CRR075060 2019-11-02 20180130_NPL0035_D4.fq.gz 4,516.45
CRR075061 2019-11-02 20180201_NPL0035_D4.fq.gz 2,578.79
CRR075062 2019-11-02 201800202_NPL0035_H1.fq.gz 1,684.63
CRR075063 2019-11-02 201800202_NPL0035_H2.fq.gz 1,269.48
CRR075064 2019-11-02 201800202_NPL0035_H4.fq.gz 2,556.59
CRR075065 2019-11-02 201800202_NPL0035_H5.fq.gz 1,916.9
CRR075066 2019-11-02 20180130_NPL0035_C4.fq.gz 2,720.6
CRR075067 2019-11-02 20180130_NPL0035_C5.fq.gz 4,451.73
CRR075068 2019-11-02 20180131_NPL0035_B1.fq.gz 3,271.12
CRR075069 2019-11-02 20180131_NPL0035_B2.fq.gz 3,117.51
CRR075070 2019-11-02 20180131_NPL0035_B3.fq.gz 3,874.75
CRR075071 2019-11-02 20180131_NPL0035_B4.fq.gz 2,800.04
CRR075072 2019-11-02 20180202_NPL0035_D5.fq.gz 2,619.47
CRR075073 2019-11-02 20180202_NPL0035_F1.fq.gz 1,724.66
CRR075074 2019-11-02 20180202_NPL0035_G1.fq.gz 1,759.98
CRR075075 2019-11-02 20180202_NPL0035_G5.fq.gz 1,396.45
CRR075076 2019-11-02 20180129_NPL0035_G3.fq.gz 3,888.53
CRR075077 2019-11-02 20180131_NPL0035_B5.fq.gz 3,833.87
SubmitterDie Tang (tangdie_solab@163.com)
OrganizationsAgricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
Date submitted2019-09-28