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CRA001854 Information
Title: Whole-Genome Resequencing of a Worldwide Collection of Rapeseed Accessions Reveals the Genetic Basis of Ecotype Divergence
BioProject: PRJCA001611 /
Release date: 2019-08-17
Files: 2014
File size: 3970.28 GB
Publication
Article title
BnaSNPDB: An interactive web portal for the efficient retrieval and analysis of SNPs among 1,007 rapeseed accessions
Journal name
Computational and Structural Biotechnology Journal
Year
2020
DOI
10.1016/j.csbj.2020.09.031
PubMed ID
33101613

Article title
BnaGVD: A genomic variation database of rapeseed (Brassica napus)
Journal name
Plant & Cell Physiology
Year
2021
DOI
10.1093/pcp/pcaa169
PubMed ID
33399824

Article title
Genotypic variation of tocopherol content in a representative genetic population and genome-wide association study on tocopherol in rapeseed (Brassica napus)
Journal name
Molecular Breeding
Year
2023
DOI
10.1007/s11032-023-01394-0
PubMed ID
37313221

Dataset Downlaod
MetaData:
CRA001854.xlsx
Files:
HTTPS：https://download.cncb.ac.cn/gsa3/CRA001854
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FTP：ftp://download.big.ac.cn/gsa3/CRA001854

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX055028 sequencing: E1007 Brassica napus Illumina HiSeq X Ten SAMC086360
Run accession Run alias Run data file information
CRR061091 Whole geome sequence : S1007 File: CRR061091_f1.fq.gz
File: CRR061091_r2.fq.gz
CRX055027 sequencing: E1006 Brassica napus Illumina HiSeq X Ten SAMC086359
Run accession Run alias Run data file information
CRR061090 Whole geome sequence : S1006 File: CRR061090_f1.fq.gz
File: CRR061090_r2.fq.gz
CRX055026 sequencing: E1005 Brassica napus Illumina HiSeq X Ten SAMC086358
Run accession Run alias Run data file information
CRR061089 Whole geome sequence : S1005 File: CRR061089_f1.fq.gz
File: CRR061089_r2.fq.gz
CRX055025 sequencing: E1004 Brassica napus Illumina HiSeq X Ten SAMC086357
Run accession Run alias Run data file information
CRR061088 Whole geome sequence : S1004 File: CRR061088_f1.fq.gz
File: CRR061088_r2.fq.gz
CRX055024 sequencing: E1003 Brassica napus Illumina HiSeq X Ten SAMC086356
Run accession Run alias Run data file information
CRR061087 Whole geome sequence : S1003 File: CRR061087_f1.fq.gz
File: CRR061087_r2.fq.gz
CRX055023 sequencing: E1002 Brassica napus Illumina HiSeq X Ten SAMC086355
Run accession Run alias Run data file information
CRR061086 Whole geome sequence : S1002 File: CRR061086_f1.fq.gz
File: CRR061086_r2.fq.gz
CRX055022 sequencing: E1001 Brassica napus Illumina HiSeq X Ten SAMC086354
Run accession Run alias Run data file information
CRR061085 Whole geome sequence : S1001 File: CRR061085_f1.fq.gz
File: CRR061085_r2.fq.gz
CRX055021 sequencing: E1000 Brassica napus Illumina HiSeq X Ten SAMC086353
Run accession Run alias Run data file information
CRR061084 Whole geome sequence : S1000 File: CRR061084_f1.fq.gz
File: CRR061084_r2.fq.gz
CRX055020 sequencing: E999 Brassica napus Illumina HiSeq X Ten SAMC086352
Run accession Run alias Run data file information
CRR061083 Whole geome sequence : S999 File: CRR061083_f1.fq.gz
File: CRR061083_r2.fq.gz
CRX055019 sequencing: E998 Brassica napus Illumina HiSeq X Ten SAMC086351
Run accession Run alias Run data file information
CRR061082 Whole geome sequence : S998 File: CRR061082_f1.fq.gz
File: CRR061082_r2.fq.gz
CRX055018 sequencing: E997 Brassica napus Illumina HiSeq X Ten SAMC086350
Run accession Run alias Run data file information
CRR061081 Whole geome sequence : S997 File: CRR061081_f1.fq.gz
File: CRR061081_r2.fq.gz
CRX055017 sequencing: E996 Brassica napus Illumina HiSeq X Ten SAMC086349
Run accession Run alias Run data file information
CRR061080 Whole geome sequence : S996 File: CRR061080_f1.fq.gz
File: CRR061080_r2.fq.gz
CRX055016 sequencing: E995 Brassica napus Illumina HiSeq X Ten SAMC086348
Run accession Run alias Run data file information
CRR061079 Whole geome sequence : S995 File: CRR061079_f1.fq.gz
File: CRR061079_r2.fq.gz
CRX055015 sequencing: E994 Brassica napus Illumina HiSeq X Ten SAMC086347
Run accession Run alias Run data file information
CRR061078 Whole geome sequence : S994 File: CRR061078_f1.fq.gz
File: CRR061078_r2.fq.gz
CRX055014 sequencing: E993 Brassica napus Illumina HiSeq X Ten SAMC086346
Run accession Run alias Run data file information
CRR061077 Whole geome sequence : S993 File: CRR061077_f1.fq.gz
File: CRR061077_r2.fq.gz
CRX055013 sequencing: E992 Brassica napus Illumina HiSeq X Ten SAMC086345
Run accession Run alias Run data file information
CRR061076 Whole geome sequence : S992 File: CRR061076_f1.fq.gz
File: CRR061076_r2.fq.gz
CRX055012 sequencing: E991 Brassica napus Illumina HiSeq X Ten SAMC086344
Run accession Run alias Run data file information
CRR061075 Whole geome sequence : S991 File: CRR061075_f1.fq.gz
File: CRR061075_r2.fq.gz
CRX055011 sequencing: E990 Brassica napus Illumina HiSeq X Ten SAMC086343
Run accession Run alias Run data file information
CRR061074 Whole geome sequence : S990 File: CRR061074_f1.fq.gz
File: CRR061074_r2.fq.gz
CRX055010 sequencing: E989 Brassica napus Illumina HiSeq X Ten SAMC086342
Run accession Run alias Run data file information
CRR061073 Whole geome sequence : S989 File: CRR061073_f1.fq.gz
File: CRR061073_r2.fq.gz
CRX055009 sequencing: E988 Brassica napus Illumina HiSeq X Ten SAMC086341
Run accession Run alias Run data file information
CRR061072 Whole geome sequence : S988 File: CRR061072_f1.fq.gz
File: CRR061072_r2.fq.gz
Submitter:Xi Li Jiang (1051927088@qq.com)
Organization:zhejiang university
Date submitted:2019-07-30