Experiment information
Accession CRX066085
Organism Mus musculus
Title Rbm14_CLIP_rep1
BioProject PRJCA001576
BioSample SAMC111635
Platform Illumina HiSeq X Ten
Library
Library name Construction protocol Strategy Source Selection Layout
The library were constructed as described in our paper. The PAR-CLIP-seq reads of the RBM14 protein were trimmed with the Cutadapt software (version 2.4). Reads that were less than 18 nt in length or contained an ambiguous nucleotide were discarded. The remained reads were aligned to the mouse genome (mm10), with parameters recommended by PARalyzer (v1.5) by the Bowtie algorithm (version 1.2.3). Clusters were obtained by PARalyzer (v1.5) with the default parameters. OTHER TRANSCRIPTOMIC other PAIRED
Processing Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Insert size (bp): 300
Release date2019-10-25
Run
Run accession Run data file information
File nameFile size (MB)
CRR078541 CRR078541_f1.fq.gz
CRR078541_r2.fq.gz
4,693.03
6,513.45
SubmitterGuihai Feng (fenggh@aliyun.com)
OrganizationInstitute of Zoology, Chinese Academy of Sciences
Date submitted2019-10-19
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