Accession | CRX066085 |
Organism | Mus musculus |
Title | Rbm14_CLIP_rep1 |
BioProject | PRJCA001576 |
BioSample | SAMC111635 |
Platform | Illumina HiSeq X Ten |
Library |
Library name |
Construction protocol |
Strategy |
Source |
Selection |
Layout |
|
The library were constructed as described in our paper. The PAR-CLIP-seq reads of the RBM14 protein were trimmed with the Cutadapt software (version 2.4). Reads that were less than 18 nt in length or contained an ambiguous nucleotide were discarded. The remained reads were aligned to the mouse genome (mm10), with parameters recommended by PARalyzer (v1.5) by the Bowtie algorithm (version 1.2.3). Clusters were obtained by PARalyzer (v1.5) with the default parameters. |
OTHER |
TRANSCRIPTOMIC |
other |
PAIRED
|
|
Processing |
Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Insert size (bp): 300
|
Release date | 2019-10-25 |
Run |
Run accession |
Run data file information |
File name | File size (MB) |
CRR078541 |
CRR078541_f1.fq.gz
CRR078541_r2.fq.gz
|
4,693.03
6,513.45
|
|
Submitter | Guihai Feng (fenggh@aliyun.com) |
Organization | Institute of Zoology, Chinese Academy of Sciences |
Date submitted | 2019-10-19 |