Experiment information
Accession CRX052851
Organism Nymphaea colorata
Title The Genome of Nymphaea colorata
BioProject PRJCA001283
BioSample SAMC073120
Platform Illumina HiSeq X Ten
Library
Library name Construction protocol Strategy Source Selection Layout
Illumina HiSeq sequencing For Hi-C sequencing and scaffolding, a Hi-C library was generated from the tender leaves of water lily. Briefly, the leaves were fixed with formaldehyde and lysed, then the cross-linked DNA was digested with MboI overnight. Sticky ends were biotinylated and proximity-ligated to form chimeric junctions, which were enriched then physically sheared to a size of 500-700 bp. Tethered Chromatin Conformation Capture GENOMIC unspecified PAIRED
Processing Planned read length (bp) for mate 1: 250
Planned read length (bp) for mate 2: 250
Insert size (bp): 500
Release date2019-09-13
Run
Run accession Release date Run data file information
File nameFile size (MB)
CRR058565 2019-09-13 N_colorata_R1.fq.gz
N_colorata_R2.fq.gz
26,665.15
31,078.62
SubmitterLiangsheng Zhang (fafuzhang@163.com)
OrganizationsBeijing Institute of Genomics, Chinese Academy of Sciences
Date submitted2019-07-09
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