| Accession | CRX050643 |
| Organism | Mus |
| Title | ATAC-Sea Adnp KO 1 |
| BioProject | PRJCA001414 |
| BioSample | SAMC070782 |
| Platform | BGISEQ-500 |
| Library |
| Library name |
Construction protocol |
Strategy |
Source |
Selection |
Layout |
|
Paired-end reads were aligned using Bowtie2 using default parameters. Only uniquely mapping reads were kept for further analysis.These uniquely mapping reads were used to generate bigwig genome coverage files similar to ChIP–seq. heat maps were generated using deeptools2.Merged ATAC-seq datasets were used to extract signal corresponding to nucleosome occupancy information with NucleoATAC |
ATAC-seq |
GENOMIC |
other |
PAIRED
|
|
| Processing |
Insert size (bp): 145
|
| Release date | 2019-12-21 |
|---|
| Run |
| Run accession |
Run data file information |
| File name | File size (MB) |
|---|
| CRR056193 |
CRR056193_f1.fq.gz
CRR056193_r2.fq.gz
|
1,161.62
1,231.87
|
| CRR056194 |
CRR056194_f1.fq.gz
CRR056194_r2.fq.gz
|
1,151.25
1,237.43
|
|
| Submitter | Sun Xiaoyun (sunnyxyun@163.com) |
|---|
| Organization | Institute of Hydrobiology, Chinese Academy of Sciences |
|---|
| Date submitted | 2019-06-02 |
|---|
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