Experiment information
Accession CRX050641
Organism Mus
Title ATAC-seq control 1
BioProject PRJCA001414
BioSample SAMC070781
Platform BGISEQ-500
Library
Library name Construction protocol Strategy Source Selection Layout
Paired-end reads were aligned using Bowtie2 using default parameters. Only uniquely mapping reads were kept for further analysis.These uniquely mapping reads were used to generate bigwig genome coverage files similar to ChIP–seq. heat maps were generated using deeptools2.Merged ATAC-seq datasets were used to extract signal corresponding to nucleosome occupancy information with NucleoATAC ATAC-seq GENOMIC other PAIRED
Processing Insert size (bp): 145
Release date2019-12-21
Run
Run accession Release date Run data file information
File nameFile size (MB)
CRR056191 2019-12-21 Clean_CL100042619_L01_4_2.fq.gz
Clean_CL100042619_L01_4_1.fq.gz
1,206.46
1,162.69
CRR056192 2019-12-21 Clean_CL100042619_L02_4_1.fq.gz
Clean_CL100042619_L02_4_2.fq.gz
1,148.82
1,208.04
SubmitterSun Xiaoyun (sunnyxyun@163.com)
Organizations Institute of Hydrobiology, Chinese Academy of Sciences
Date submitted2019-06-02