| Accession | CRX050203 |
| Organism | Oryza sativa Indica Group |
| Title | 9311.HiC |
| BioProject | PRJCA001420 |
| BioSample | SAMC069968 |
| Platform | Illumina HiSeq X Ten |
| Library |
| Library name |
Construction protocol |
Strategy |
Source |
Selection |
Layout |
|
Briefly, the leaves were fixed with formaldehyde, lysed, and then the cross-linked DNA digested with MboI over night. Sticky ends were biotinylated and proximity-ligated to form chimeric junctions, that were enriched for and then physically sheared to a size of 500-700 bp. Chimeric fragments representing the original cross-linked long-distance physical interactions were then processed into paired-end sequencing libraries and 150 bp paired-end reads were produced on Illumina HiSeq X platform. |
Hi-C |
GENOMIC |
Restriction Digest |
PAIRED
|
|
| Processing |
Planned read length (bp) for mate 1: 150
Planned read length (bp) for mate 2: 150
Insert size (bp): 500
|
| Release date | 2019-05-31 |
|---|
| Run |
| Run accession |
Run data file information |
| File name | File size (MB) |
|---|
| CRR055773 |
CRR055773_f1.fastq.gz
CRR055773_r2.fastq.gz
|
16,597.03
18,871.43
|
|
| Submitter | lin jing (lolyemily@163.com) |
|---|
| Organization | Beijing Institute of Genomics, Chinese Academy of Sciences |
|---|
| Date submitted | 2019-05-14 |
|---|
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