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CRA001334 Information
Title: Longitudinal RNA-seq of breast muscle, liver, and abdominal fat in chicken
BioProject: PRJCA001192 /
Release date: 2020-08-19
Files: 144
File size: 330.61 GB
Publication
Article title
RNA-Seq Analysis Reveals Hub Genes Involved in Chicken Intramuscular Fat and Abdominal Fat Deposition During Development
Journal name
Frontiers in Genetics
Year
2020
DOI
10.3389/fgene.2020.01009
PubMed ID
33117416

Article title
Time Course Transcriptomic Study Reveals the Gene Regulation During Liver Development and the Correlation With Abdominal Fat Weight in Chicken
Journal name
Frontiers in Genetics
Year
2021
DOI
10.3389/fgene.2021.723519
PubMed ID
34567076

Article title
Large-Scale Whole Genome Sequencing Study Reveals Genetic Architecture and Key Variants for Breast Muscle Weight in Native Chickens
Journal name
Genes
Year
2021
DOI
10.3390/genes13010003
PubMed ID
35052342

Article title
Genomic insights into the contribution of de novo lipogenesis to intramuscular fat deposition in chicken
Journal name
Journal of Advanced Research
Year
2023
DOI
10.1016/j.jare.2023.12.003
PubMed ID
38065407

Dataset Downlaod
MetaData:
CRA001334.xlsx
Files:
HTTPS：https://download.cncb.ac.cn/gsa3/CRA001334
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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX038418 D180A19 Gallus gallus Illumina HiSeq 2500 SAMC053434
Run accession Run alias Run data file information
CRR043084 D180A19 File: CRR043084_f1.fastq.gz
File: CRR043084_r2.fastq.gz
CRX038417 D180A14 Gallus gallus Illumina HiSeq 2500 SAMC053433
Run accession Run alias Run data file information
CRR043083 D180A14 File: CRR043083_f1.fastq.gz
File: CRR043083_r2.fastq.gz
CRX038416 D180A07 Gallus gallus Illumina HiSeq 2500 SAMC053432
Run accession Run alias Run data file information
CRR043082 D180A07 File: CRR043082_f1.fastq.gz
File: CRR043082_r2.fastq.gz
CRX038415 D180L19 Gallus gallus Illumina HiSeq 2500 SAMC053431
Run accession Run alias Run data file information
CRR043081 D180L19 File: CRR043081_f1.fastq.gz
File: CRR043081_r2.fastq.gz
CRX038414 D180L14 Gallus gallus Illumina HiSeq 2500 SAMC053430
Run accession Run alias Run data file information
CRR043080 D180L14 File: CRR043080_f1.fastq.gz
File: CRR043080_r2.fastq.gz
CRX038413 D180L07 Gallus gallus Illumina HiSeq 2500 SAMC053429
Run accession Run alias Run data file information
CRR043079 D180L07 File: CRR043079_f1.fastq.gz
File: CRR043079_r2.fastq.gz
CRX038412 D180B19 Gallus gallus Illumina HiSeq 2500 SAMC053428
Run accession Run alias Run data file information
CRR043078 D180B19 File: CRR043078_f1.fastq.gz
File: CRR043078_r2.fastq.gz
CRX038411 D180B14 Gallus gallus Illumina HiSeq 2500 SAMC053427
Run accession Run alias Run data file information
CRR043077 D180B14 File: CRR043077_f1.fastq.gz
File: CRR043077_r2.fastq.gz
CRX038410 D180B07 Gallus gallus Illumina HiSeq 2500 SAMC053426
Run accession Run alias Run data file information
CRR043076 D180B07 File: CRR043076_f1.fastq.gz
File: CRR043076_r2.fastq.gz
CRX038409 D140A19 Gallus gallus Illumina HiSeq 2500 SAMC053425
Run accession Run alias Run data file information
CRR043075 D140A19 File: CRR043075_f1.fastq.gz
File: CRR043075_r2.fastq.gz
CRX038408 D140A14 Gallus gallus Illumina HiSeq 2500 SAMC053424
Run accession Run alias Run data file information
CRR043074 D140A14 File: CRR043074_f1.fastq.gz
File: CRR043074_r2.fastq.gz
CRX038407 D140A07 Gallus gallus Illumina HiSeq 2500 SAMC053423
Run accession Run alias Run data file information
CRR043073 D140A07 File: CRR043073_f1.fastq.gz
File: CRR043073_r2.fastq.gz
CRX038406 D140L19 Gallus gallus Illumina HiSeq 2500 SAMC053422
Run accession Run alias Run data file information
CRR043072 D140L19 File: CRR043072_f1.fastq.gz
File: CRR043072_r2.fastq.gz
CRX038405 D140L14 Gallus gallus Illumina HiSeq 2500 SAMC053421
Run accession Run alias Run data file information
CRR043071 D140L14 File: CRR043071_f1.fastq.gz
File: CRR043071_r2.fastq.gz
CRX038404 D140L07 Gallus gallus Illumina HiSeq 2500 SAMC053420
Run accession Run alias Run data file information
CRR043070 D140L07 File: CRR043070_f1.fastq.gz
File: CRR043070_r2.fastq.gz
CRX038403 D140B19 Gallus gallus Illumina HiSeq 2500 SAMC053419
Run accession Run alias Run data file information
CRR043069 D140B19 File: CRR043069_f1.fastq.gz
File: CRR043069_r2.fastq.gz
CRX038402 D140B14 Gallus gallus Illumina HiSeq 2500 SAMC053418
Run accession Run alias Run data file information
CRR043068 D140B14 File: CRR043068_f1.fastq.gz
File: CRR043068_r2.fastq.gz
CRX038401 D140B07 Gallus gallus Illumina HiSeq 2500 SAMC053417
Run accession Run alias Run data file information
CRR043067 D140B07 File: CRR043067_f1.fastq.gz
File: CRR043067_r2.fastq.gz
CRX038400 D98A19 Gallus gallus Illumina HiSeq 2500 SAMC053416
Run accession Run alias Run data file information
CRR043066 D98A19 File: CRR043066_f1.fastq.gz
File: CRR043066_r2.fastq.gz
CRX038399 D98A14 Gallus gallus Illumina HiSeq 2500 SAMC053415
Run accession Run alias Run data file information
CRR043065 D98A14 File: CRR043065_f1.fastq.gz
File: CRR043065_r2.fastq.gz
Submitter:Siyuan Xing (tcsxingsy@126.com)
Organization:Institute of Animal Sciences, Chinese Academy of Agricultural Sciences
Date submitted:2019-01-08