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CRA001325 Information
Title: Enhancer reprogramming promotes TGFβ-induced epithelial-to-mesenchymal transition and cancer metastasis
BioProject: PRJCA001144 /
Release date: 2020-06-30
Files: 96
File size: 282.32 GB
Publication
Article title
Enhancer Reprogramming within Pre-existing Topologically Associated Domains Promotes TGF-β-Induced EMT and Cancer Metastasis
Journal name
Molecular Therapy
Year
2020
DOI
10.1016/j.ymthe.2020.05.026
PubMed ID
32526202

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MetaData:
CRA001325.xlsx
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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX038069 A549 TEAD4 shRNA TGFb H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053334
Run accession Run alias Run data file information
CRR042719 A549 TEAD4 shRNA TGFb H3K27ac ChIP-seq File: CRR042719_f1.fastq.gz
File: CRR042719_r2.fastq.gz
CRX038068 A549 TEAD2 shRNA TGFb H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053333
Run accession Run alias Run data file information
CRR042718 A549 TEAD2 shRNA TGFb H3K27ac ChIP-seq File: CRR042718_f1.fastq.gz
File: CRR042718_r2.fastq.gz
CRX038067 A549 shRNA control replicate2 TGFb H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053332
Run accession Run alias Run data file information
CRR042717 A549 shRNA control replicate2 TGFb H3K27ac ChIP-seq File: CRR042717_f1.fastq.gz
File: CRR042717_r2.fastq.gz
CRX038066 A549 TEAD4 shRNA H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053331
Run accession Run alias Run data file information
CRR042716 A549 TEAD4 shRNA H3K27ac ChIP-seq File: CRR042716_f1.fastq.gz
File: CRR042716_r2.fastq.gz
CRX038065 A549 TEAD2 shRNA H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053330
Run accession Run alias Run data file information
CRR042715 A549 TEAD2 shRNA H3K27ac ChIP-seq File: CRR042715_f1.fastq.gz
File: CRR042715_r2.fastq.gz
CRX038064 A549 GFP control H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053329
Run accession Run alias Run data file information
CRR042714 A549 GFP control H3K27ac ChIP-seq File: CRR042714_f1.fastq.gz
File: CRR042714_r2.fastq.gz
CRX038063 A549 FOXA2 shRNA2 H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053328
Run accession Run alias Run data file information
CRR042713 A549 FOXA2 shRNA2 H3K27ac ChIP-seq File: CRR042713_f1.fastq.gz
File: CRR042713_r2.fastq.gz
CRX038062 A549 shRNA control replicate1 H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053327
Run accession Run alias Run data file information
CRR042712 A549 shRNA control replicate1 H3K27ac ChIP-seq File: CRR042712_f1.fastq.gz
File: CRR042712_r2.fastq.gz
CRX038061 A549 TEAD4 shRNA input Homo sapiens Illumina HiSeq X Ten SAMC053326
Run accession Run alias Run data file information
CRR042711 A549 TEAD4 shRNA input File: CRR042711_f1.fastq.gz
File: CRR042711_r2.fastq.gz
CRX038060 A549 TEAD2 shRNA input Homo sapiens Illumina HiSeq X Ten SAMC053325
Run accession Run alias Run data file information
CRR042710 A549 TEAD2 shRNA input File: CRR042710_f1.fastq.gz
File: CRR042710_r2.fastq.gz
CRX038059 A549 shRNA control replicate2 input Homo sapiens Illumina HiSeq X Ten SAMC053324
Run accession Run alias Run data file information
CRR042709 A549 shRNA control replicate2 input File: CRR042709_f1.fastq.gz
File: CRR042709_r2.fastq.gz
CRX038058 A549 FOXA2 OE input Homo sapiens Illumina HiSeq X Ten SAMC053323
Run accession Run alias Run data file information
CRR042708 A549 FOXA2 OE input File: CRR042708_f1.fastq.gz
File: CRR042708_r2.fastq.gz
CRX038057 A549 GFP control input Homo sapiens Illumina HiSeq X Ten SAMC053322
Run accession Run alias Run data file information
CRR042707 A549 GFP control input File: CRR042707_f1.fastq.gz
File: CRR042707_r2.fastq.gz
CRX038056 A549 shRNA control replicate2 H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053321
Run accession Run alias Run data file information
CRR042706 A549 shRNA control replicate2 H3K27ac ChIP-seq File: CRR042706_f1.fastq.gz
File: CRR042706_r2.fastq.gz
CRX038055 A549 FOXA2 OE H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053320
Run accession Run alias Run data file information
CRR042705 A549 FOXA2 OE H3K27ac ChIP-seq File: CRR042705_f1.fastq.gz
File: CRR042705_r2.fastq.gz
CRX038054 A549 FOXA2 shRNA2 input Homo sapiens Illumina HiSeq X Ten SAMC053319
Run accession Run alias Run data file information
CRR042704 A549 FOXA2 shRNA2 input File: CRR042704_f1.fastq.gz
File: CRR042704_r2.fastq.gz
CRX038053 A549 shRNA control replicate1 input Homo sapiens Illumina HiSeq X Ten SAMC053318
Run accession Run alias Run data file information
CRR042703 A549 shRNA control replicate1 input File: CRR042703_f1.fastq.gz
File: CRR042703_r2.fastq.gz
CRX038052 A549 control Input Homo sapiens Illumina HiSeq X Ten SAMC053317
Run accession Run alias Run data file information
CRR042702 A549 control Input File: CRR042702_f1.fastq.gz
File: CRR042702_r2.fastq.gz
CRX038051 A549 TGFb Input Homo sapiens Illumina HiSeq X Ten SAMC053316
Run accession Run alias Run data file information
CRR042701 A549 TGFb Input File: CRR042701_f1.fastq.gz
File: CRR042701_r2.fastq.gz
CRX038050 A549 H3K4me3 ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053315
Run accession Run alias Run data file information
CRR042700 A549 H3K4me3 ChIP-seq File: CRR042700_f1.fastq.gz
File: CRR042700_r2.fastq.gz
Submitter:Liye Zhang (zhangly@shanghaitech.edu.cn)
Organization:ShanghaiTech University
Date submitted:2018-12-29