CRA001325 Information
Title: Enhancer reprogramming promotes TGFβ-induced epithelial-to-mesenchymal transition and cancer metastasis
BioProject: PRJCA001144 / CRP000741
Release date: 2020-06-30
Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX038069 A549 TEAD4 shRNA TGFb H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053334
CRS029383
Run accession Run alias Run data file information
CRR042719 A549 TEAD4 shRNA TGFb H3K27ac ChIP-seq File: CRR042719_f1.fastq.gz
File: CRR042719_r2.fastq.gz
CRX038068 A549 TEAD2 shRNA TGFb H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053333
CRS029382
Run accession Run alias Run data file information
CRR042718 A549 TEAD2 shRNA TGFb H3K27ac ChIP-seq File: CRR042718_f1.fastq.gz
File: CRR042718_r2.fastq.gz
CRX038067 A549 shRNA control replicate2 TGFb H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053332
CRS029381
Run accession Run alias Run data file information
CRR042717 A549 shRNA control replicate2 TGFb H3K27ac ChIP-seq File: CRR042717_f1.fastq.gz
File: CRR042717_r2.fastq.gz
CRX038066 A549 TEAD4 shRNA H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053331
CRS029380
Run accession Run alias Run data file information
CRR042716 A549 TEAD4 shRNA H3K27ac ChIP-seq File: CRR042716_f1.fastq.gz
File: CRR042716_r2.fastq.gz
CRX038065 A549 TEAD2 shRNA H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053330
CRS029379
Run accession Run alias Run data file information
CRR042715 A549 TEAD2 shRNA H3K27ac ChIP-seq File: CRR042715_f1.fastq.gz
File: CRR042715_r2.fastq.gz
CRX038064 A549 GFP control H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053329
CRS029378
Run accession Run alias Run data file information
CRR042714 A549 GFP control H3K27ac ChIP-seq File: CRR042714_f1.fastq.gz
File: CRR042714_r2.fastq.gz
CRX038063 A549 FOXA2 shRNA2 H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053328
CRS029377
Run accession Run alias Run data file information
CRR042713 A549 FOXA2 shRNA2 H3K27ac ChIP-seq File: CRR042713_f1.fastq.gz
File: CRR042713_r2.fastq.gz
CRX038062 A549 shRNA control replicate1 H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053327
CRS029376
Run accession Run alias Run data file information
CRR042712 A549 shRNA control replicate1 H3K27ac ChIP-seq File: CRR042712_f1.fastq.gz
File: CRR042712_r2.fastq.gz
CRX038061 A549 TEAD4 shRNA input Homo sapiens Illumina HiSeq X Ten SAMC053326
CRS029375
Run accession Run alias Run data file information
CRR042711 A549 TEAD4 shRNA input File: CRR042711_f1.fastq.gz
File: CRR042711_r2.fastq.gz
CRX038060 A549 TEAD2 shRNA input Homo sapiens Illumina HiSeq X Ten SAMC053325
CRS029374
Run accession Run alias Run data file information
CRR042710 A549 TEAD2 shRNA input File: CRR042710_f1.fastq.gz
File: CRR042710_r2.fastq.gz
CRX038059 A549 shRNA control replicate2 input Homo sapiens Illumina HiSeq X Ten SAMC053324
CRS029373
Run accession Run alias Run data file information
CRR042709 A549 shRNA control replicate2 input File: CRR042709_f1.fastq.gz
File: CRR042709_r2.fastq.gz
CRX038058 A549 FOXA2 OE input Homo sapiens Illumina HiSeq X Ten SAMC053323
CRS029372
Run accession Run alias Run data file information
CRR042708 A549 FOXA2 OE input File: CRR042708_f1.fastq.gz
File: CRR042708_r2.fastq.gz
CRX038057 A549 GFP control input Homo sapiens Illumina HiSeq X Ten SAMC053322
CRS029371
Run accession Run alias Run data file information
CRR042707 A549 GFP control input File: CRR042707_f1.fastq.gz
File: CRR042707_r2.fastq.gz
CRX038056 A549 shRNA control replicate2 H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053321
CRS029370
Run accession Run alias Run data file information
CRR042706 A549 shRNA control replicate2 H3K27ac ChIP-seq File: CRR042706_f1.fastq.gz
File: CRR042706_r2.fastq.gz
CRX038055 A549 FOXA2 OE H3K27ac ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053320
CRS029369
Run accession Run alias Run data file information
CRR042705 A549 FOXA2 OE H3K27ac ChIP-seq File: CRR042705_f1.fastq.gz
File: CRR042705_r2.fastq.gz
CRX038054 A549 FOXA2 shRNA2 input Homo sapiens Illumina HiSeq X Ten SAMC053319
CRS029368
Run accession Run alias Run data file information
CRR042704 A549 FOXA2 shRNA2 input File: CRR042704_f1.fastq.gz
File: CRR042704_r2.fastq.gz
CRX038053 A549 shRNA control replicate1 input Homo sapiens Illumina HiSeq X Ten SAMC053318
CRS029367
Run accession Run alias Run data file information
CRR042703 A549 shRNA control replicate1 input File: CRR042703_f1.fastq.gz
File: CRR042703_r2.fastq.gz
CRX038052 A549 control Input Homo sapiens Illumina HiSeq X Ten SAMC053317
CRS029366
Run accession Run alias Run data file information
CRR042702 A549 control Input File: CRR042702_f1.fastq.gz
File: CRR042702_r2.fastq.gz
CRX038051 A549 TGFb Input Homo sapiens Illumina HiSeq X Ten SAMC053316
CRS029365
Run accession Run alias Run data file information
CRR042701 A549 TGFb Input File: CRR042701_f1.fastq.gz
File: CRR042701_r2.fastq.gz
CRX038050 A549 H3K4me3 ChIP-seq Homo sapiens Illumina HiSeq X Ten SAMC053315
CRS029364
Run accession Run alias Run data file information
CRR042700 A549 H3K4me3 ChIP-seq File: CRR042700_f1.fastq.gz
File: CRR042700_r2.fastq.gz
Submitter:Liye Zhang (zhangly@shanghaitech.edu.cn)
Organizations:ShanghaiTech University
Date submitted:2018-12-29